Difference between revisions of "TSS:Hg 102035.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC144680:0 AK057341:0 BC112357:0 ENST00000374283.5:-58 | + | |all_trans=NM_001378211:0 NR_109816:0 BC144680:0 AK057341:0 BC112357:0 ENST00000374283.5:-58 LP896555:-58 LP895630:-303 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=111794950 | |end=111794950 | ||
|end_of_center_position=111794939 | |end_of_center_position=111794939 | ||
|entrez_id=158401 | |entrez_id=158401 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias= | + | |gene_alias=C9orf84{{!}}ZIP2{{!}}ZIP2H |
| − | |gene_description= | + | |gene_description=shortage in chiasmata 1 |
|gene_id=158401 | |gene_id=158401 | ||
| − | |gene_name= | + | |gene_name=shortage in chiasmata 1 |
|gene_source=HGNC:26535 | |gene_source=HGNC:26535 | ||
| − | |gene_symbol= | + | |gene_symbol=SHOC1 |
| − | |gene_synonyms=FLJ32779 | + | |gene_synonyms=FLJ32779 MZIP2 Zip2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26535 | |hgnc_mgi_id=HGNC:26535 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_173521 | |nearest_refseq=NM_173521 | ||
|nearest_unigene=Hs.428209 | |nearest_unigene=Hs.428209 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=111794927 | |start=111794927 | ||
|start_of_center_position=111794938 | |start_of_center_position=111794938 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC144680 AK057341 BC112357 | + | |transcript_name=NM_001378211 NR_109816 BC144680 AK057341 BC112357 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102035.1 | |tss_id=hg_102035.1 | ||
Revision as of 16:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111794938 |
|---|---|
| End of the center position in the TSS region: | 111794939 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001378211 NR_109816 BC144680 AK057341 BC112357 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | NM_001378211:0 NR_109816:0 BC144680:0 AK057341:0 BC112357:0 ENST00000374283.5:-58 LP896555:-58 LP895630:-303 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NR_109816 |
| Entrez ID: | 158401 |
| Nearest Unigene: | Hs.428209 |
| Nearest Refseq: | NM_173521 |
| Nearest Ensembl: | ENSG00000165181 |
| Gene Name: | shortage in chiasmata 1 |
| Gene Alias: | C9orf84|ZIP2|ZIP2H |
| Gene Description: | shortage in chiasmata 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
