Difference between revisions of "TSS:Hg 102067.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000487997 | + | |all_trans=ENST00000487997.1:1 ENST00000343327.6:-25 AK001685:-25 AK302558:-25 CR749471:-33 ENST00000450374.1:-61 ENST00000374257.6:-66 NM_001244896:-66 NM_001244897:-66 NM_005156:-66 NM_001163788:-66 NM_001375920:-66 NM_001375918:-66 BC039896:-67 ENST00000374255.6:-72 ENST00000334318.10:-111 NM_001163790:-111 LF354993:122 MA590570:122 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=1 | |distance=1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=69 |
|end=112333553 | |end=112333553 | ||
|end_of_center_position=112333550 | |end_of_center_position=112333550 | ||
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|hgnc_mgi_id=HGNC:10253 | |hgnc_mgi_id=HGNC:10253 | ||
|nearest_ensembl=ENSG00000119314 | |nearest_ensembl=ENSG00000119314 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244897 |
|nearest_refseq=NM_005156 | |nearest_refseq=NM_005156 | ||
|nearest_unigene=Hs.269988 | |nearest_unigene=Hs.269988 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=112333546 | |start=112333546 | ||
|start_of_center_position=112333549 | |start_of_center_position=112333549 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000487997 | + | |transcript_name=ENST00000487997.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102067.1 | |tss_id=hg_102067.1 | ||
Revision as of 16:54, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 112333549 |
|---|---|
| End of the center position in the TSS region: | 112333550 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000487997.1 |
|---|---|
| Distance: | 1 |
| Num_trans: | 19 |
| All_trans: | ENST00000487997.1:1 ENST00000343327.6:-25 AK001685:-25 AK302558:-25 CR749471:-33 ENST00000450374.1:-61 ENST00000374257.6:-66 NM_001244896:-66 NM_001244897:-66 NM_005156:-66 NM_001163788:-66 NM_001375920:-66 NM_001375918:-66 BC039896:-67 ENST00000374255.6:-72 ENST00000334318.10:-111 NM_001163790:-111 LF354993:122 MA590570:122 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_001244897 |
| Entrez ID: | 9991 |
| Nearest Unigene: | Hs.269988 |
| Nearest Refseq: | NM_005156 |
| Nearest Ensembl: | ENSG00000119314 |
| Gene Name: | polypyrimidine tract binding protein 3 |
| Gene Alias: | ROD1 |
| Gene Description: | polypyrimidine tract binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
