Difference between revisions of "TSS:Hg 102069.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000374255.6:0 ENST00000450374.1:0 | + | |all_trans=ENST00000374257.6:0 ENST00000374255.6:0 ENST00000450374.1:0 NM_001244896:0 NM_001244897:0 NM_005156:0 NM_001163788:0 NM_001375920:0 NM_001375918:0 BC039896:0 ENST00000334318.10:-12 NM_001163790:-12 CR749471:18 ENST00000343327.6:26 AK001685:26 AK302558:26 ENST00000487997.1:58 LF354993:179 MA590570:179 LF354994:-441 MA590571:-441 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-9 |
|end=112333652 | |end=112333652 | ||
|end_of_center_position=112333628 | |end_of_center_position=112333628 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:10253 | |hgnc_mgi_id=HGNC:10253 | ||
|nearest_ensembl=ENSG00000119314 | |nearest_ensembl=ENSG00000119314 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244896 |
|nearest_refseq=NM_005156 | |nearest_refseq=NM_005156 | ||
|nearest_unigene=Hs.269988 | |nearest_unigene=Hs.269988 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=112333627 | |start_of_center_position=112333627 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374255.6 ENST00000450374.1 | + | |transcript_name=ENST00000374257.6 ENST00000374255.6 ENST00000450374.1 NM_001244896 NM_001244897 NM_005156 NM_001163788 NM_001375920 NM_001375918 BC039896 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102069.1 | |tss_id=hg_102069.1 | ||
Revision as of 16:54, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 112333627 |
|---|---|
| End of the center position in the TSS region: | 112333628 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374257.6 ENST00000374255.6 ENST00000450374.1 NM_001244896 NM_001244897 NM_005156 NM_001163788 NM_001375920 NM_001375918 BC039896 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000374257.6:0 ENST00000374255.6:0 ENST00000450374.1:0 NM_001244896:0 NM_001244897:0 NM_005156:0 NM_001163788:0 NM_001375920:0 NM_001375918:0 BC039896:0 ENST00000334318.10:-12 NM_001163790:-12 CR749471:18 ENST00000343327.6:26 AK001685:26 AK302558:26 ENST00000487997.1:58 LF354993:179 MA590570:179 LF354994:-441 MA590571:-441 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_001244896 |
| Entrez ID: | 9991 |
| Nearest Unigene: | Hs.269988 |
| Nearest Refseq: | NM_005156 |
| Nearest Ensembl: | ENSG00000119314 |
| Gene Name: | polypyrimidine tract binding protein 3 |
| Gene Alias: | ROD1 |
| Gene Description: | polypyrimidine tract binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
