Difference between revisions of "TSS:Hg 102077.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TSCOT= | |TSCOT= | ||
| − | |all_trans=AK314414:22 AK055571:-27 ENST00000491462.2:30 | + | |all_trans=AK314414:22 ENST00000374228.5:-24 NM_033051:-24 AK055571:-27 ENST00000491462.2:30 AF242557:-61 BC048285:75 HQ448607:158 KJ899379:158 CU690566:158 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=22 | |distance=22 | ||
| − | |distance_to_tss= | + | |distance_to_tss=30 |
|end=112890852 | |end=112890852 | ||
|end_of_center_position=112890846 | |end_of_center_position=112890846 | ||
|entrez_id=57864 | |entrez_id=57864 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=Ly110 | + | |gene_alias=Ly110{{!}}TSCOT |
|gene_description=solute carrier family 46 member 2 | |gene_description=solute carrier family 46 member 2 | ||
|gene_id=57864 | |gene_id=57864 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_033051 | |nearest_refseq=NM_033051 | ||
|nearest_unigene=Hs.512668 | |nearest_unigene=Hs.512668 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=112890839 | |start=112890839 | ||
|start_of_center_position=112890845 | |start_of_center_position=112890845 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-92(CCTTTTCTGGCC,+,0.00) |
|transcript_name=AK314414 | |transcript_name=AK314414 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:55, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112890845 |
|---|---|
| End of the center position in the TSS region: | 112890846 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK314414 |
|---|---|
| Distance: | 22 |
| Num_trans: | 10 |
| All_trans: | AK314414:22 ENST00000374228.5:-24 NM_033051:-24 AK055571:-27 ENST00000491462.2:30 AF242557:-61 BC048285:75 HQ448607:158 KJ899379:158 CU690566:158 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_033051 |
| Entrez ID: | 57864 |
| Nearest Unigene: | Hs.512668 |
| Nearest Refseq: | NM_033051 |
| Nearest Ensembl: | ENSG00000119457 |
| Gene Name: | solute carrier family 46 member 2 |
| Gene Alias: | Ly110|TSCOT |
| Gene Description: | solute carrier family 46 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -92(CCTTTTCTGGCC,+,0.00) |
