Difference between revisions of "TSS:Hg 102294.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Cep215= | |Cep215= | ||
|MCPH3= | |MCPH3= | ||
| − | |all_trans=ENST00000473282.6:16 ENST00000480112.5 | + | |all_trans=ENST00000473282.6:16 ENST00000480112.5:16 BC136275:16 BC143732:16 BC143734:16 BC143755:16 BC143760:16 BC143762:16 BC143753:16 BC143764:16 ENST00000481266.1:-24 AB489151:40 DQ581824:44 AF448860:-83 BC146782:-102 AB046853:-102 BC019577:-103 BX537421:-117 ENST00000360190.8:-121 AL833481:-121 BX537759:-121 AK122913:-122 BX537708:-122 ENST00000349780.9:-130 NR_073555:-130 NM_001011649:-130 NR_073554:-130 NR_073557:-130 NR_073558:-130 NR_073556:-130 NM_018249:-130 ENST00000360822.7:-133 ENST00000491334.1:-133 NM_001272039:-133 KP294527:-133 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=16 | |distance=16 | ||
| − | |distance_to_tss= | + | |distance_to_tss=138 |
|end=120580037 | |end=120580037 | ||
|end_of_center_position=120580029 | |end_of_center_position=120580029 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=C48 | + | |gene_alias=C48{{!}}Cep215{{!}}MCPH3 |
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
|gene_id=55755 | |gene_id=55755 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:18672 | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073557 |
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=120580020 | |start=120580020 | ||
|start_of_center_position=120580028 | |start_of_center_position=120580028 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000473282.6 ENST00000480112.5 | + | |transcript_name=ENST00000473282.6 ENST00000480112.5 BC136275 BC143732 BC143734 BC143755 BC143760 BC143762 BC143753 BC143764 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102294.1 | |tss_id=hg_102294.1 | ||
Revision as of 17:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120580028 |
|---|---|
| End of the center position in the TSS region: | 120580029 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000473282.6 ENST00000480112.5 BC136275 BC143732 BC143734 BC143755 BC143760 BC143762 BC143753 BC143764 |
|---|---|
| Distance: | 16 |
| Num_trans: | 35 |
| All_trans: | ENST00000473282.6:16 ENST00000480112.5:16 BC136275:16 BC143732:16 BC143734:16 BC143755:16 BC143760:16 BC143762:16 BC143753:16 BC143764:16 ENST00000481266.1:-24 AB489151:40 DQ581824:44 AF448860:-83 BC146782:-102 AB046853:-102 BC019577:-103 BX537421:-117 ENST00000360190.8:-121 AL833481:-121 BX537759:-121 AK122913:-122 BX537708:-122 ENST00000349780.9:-130 NR_073555:-130 NM_001011649:-130 NR_073554:-130 NR_073557:-130 NR_073558:-130 NR_073556:-130 NM_018249:-130 ENST00000360822.7:-133 ENST00000491334.1:-133 NM_001272039:-133 KP294527:-133 |
TATA-Box annotation
| Distance to TSS: | 138 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
