Difference between revisions of "TSS:Hg 102296.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Cep215= | |Cep215= | ||
|MCPH3= | |MCPH3= | ||
| − | |all_trans=ENST00000360822.7:0 ENST00000349780. | + | |all_trans=ENST00000360822.7:0 ENST00000349780.9:0 ENST00000360190.8:0 ENST00000491334.1:0 NM_001272039:0 NR_073555:0 NM_001011649:0 NR_073554:0 NR_073557:0 NR_073558:0 NR_073556:0 NM_018249:0 KP294527:0 BC146782:0 AL833481:0 AB046853:0 BX537759:0 AK122913:0 BX537421:0 BX537708:0 BC019577:0 AF448860:18 ENST00000481266.1:77 ENST00000473282.6:133 ENST00000480112.5:133 BC136275:133 BC143732:133 BC143734:133 BC143755:133 BC143760:133 BC143762:133 BC143753:133 BC143764:133 AB489151:157 DQ581824:161 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=10 |
|end=120580177 | |end=120580177 | ||
|end_of_center_position=120580158 | |end_of_center_position=120580158 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=C48 | + | |gene_alias=C48{{!}}Cep215{{!}}MCPH3 |
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
|gene_id=55755 | |gene_id=55755 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:18672 | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073557 |
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=120580137 | |start=120580137 | ||
|start_of_center_position=120580157 | |start_of_center_position=120580157 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000360822.7 ENST00000349780. | + | |transcript_name=ENST00000360822.7 ENST00000349780.9 ENST00000360190.8 ENST00000491334.1 NM_001272039 NR_073555 NM_001011649 NR_073554 NR_073557 NR_073558 NR_073556 NM_018249 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102296.1 | |tss_id=hg_102296.1 | ||
Revision as of 17:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120580157 |
|---|---|
| End of the center position in the TSS region: | 120580158 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000360822.7 ENST00000349780.9 ENST00000360190.8 ENST00000491334.1 NM_001272039 NR_073555 NM_001011649 NR_073554 NR_073557 NR_073558 NR_073556 NM_018249 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 |
|---|---|
| Distance: | 0 |
| Num_trans: | 35 |
| All_trans: | ENST00000360822.7:0 ENST00000349780.9:0 ENST00000360190.8:0 ENST00000491334.1:0 NM_001272039:0 NR_073555:0 NM_001011649:0 NR_073554:0 NR_073557:0 NR_073558:0 NR_073556:0 NM_018249:0 KP294527:0 BC146782:0 AL833481:0 AB046853:0 BX537759:0 AK122913:0 BX537421:0 BX537708:0 BC019577:0 AF448860:18 ENST00000481266.1:77 ENST00000473282.6:133 ENST00000480112.5:133 BC136275:133 BC143732:133 BC143734:133 BC143755:133 BC143760:133 BC143762:133 BC143753:133 BC143764:133 AB489151:157 DQ581824:161 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
