Difference between revisions of "TSS:Hg 102399.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RNF164= | |RNF164= | ||
| − | |all_trans= | + | |all_trans=ENST00000478216.1:0 LF205679:0 MA441256:0 ENST00000498479.5:18 AL833177:18 ENST00000335387.9:25 BC044642:25 ENST00000423239.6:-32 ENST00000357244.7:-50 NM_001354482:-50 NM_001354478:-50 NM_001354479:-50 NM_001100588:-50 NM_018835:-50 NM_001354486:-50 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=85 |
|end=122905309 | |end=122905309 | ||
|end_of_center_position=122905275 | |end_of_center_position=122905275 | ||
|entrez_id=54542 | |entrez_id=54542 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=MNAB | + | |gene_alias=MNAB{{!}}RNF164 |
|gene_description=ring finger and CCCH-type domains 2 | |gene_description=ring finger and CCCH-type domains 2 | ||
|gene_id=54542 | |gene_id=54542 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:21461 | |hgnc_mgi_id=HGNC:21461 | ||
|nearest_ensembl=ENSG00000056586 | |nearest_ensembl=ENSG00000056586 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001354479 |
|nearest_refseq=NM_018835 | |nearest_refseq=NM_018835 | ||
|nearest_unigene=Hs.533499 | |nearest_unigene=Hs.533499 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=122905239 | |start=122905239 | ||
|start_of_center_position=122905274 | |start_of_center_position=122905274 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000478216.1 LF205679 MA441256 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102399.1 | |tss_id=hg_102399.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122905274 |
|---|---|
| End of the center position in the TSS region: | 122905275 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000478216.1 LF205679 MA441256 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000478216.1:0 LF205679:0 MA441256:0 ENST00000498479.5:18 AL833177:18 ENST00000335387.9:25 BC044642:25 ENST00000423239.6:-32 ENST00000357244.7:-50 NM_001354482:-50 NM_001354478:-50 NM_001354479:-50 NM_001100588:-50 NM_018835:-50 NM_001354486:-50 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_001354479 |
| Entrez ID: | 54542 |
| Nearest Unigene: | Hs.533499 |
| Nearest Refseq: | NM_018835 |
| Nearest Ensembl: | ENSG00000056586 |
| Gene Name: | ring finger and CCCH-type domains 2 |
| Gene Alias: | MNAB|RNF164 |
| Gene Description: | ring finger and CCCH-type domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
