Difference between revisions of "TSS:Hg 102943.1"
From referenceTSS
| Line 2: | Line 2: | ||
|RGF= | |RGF= | ||
|RalGEF= | |RalGEF= | ||
| − | |all_trans= | + | |all_trans=ENST00000372047.7:23 BC059362:-31 ENST00000372050.8:-32 NM_006266:-32 NM_001271776:-32 AF295773:34 ENST00000493438.5:43 AK074114:43 GQ129266:43 GQ129265:43 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=23 | |distance=23 | ||
| − | |distance_to_tss= | + | |distance_to_tss=37 |
|end=133121208 | |end=133121208 | ||
|end_of_center_position=133121204 | |end_of_center_position=133121204 | ||
|entrez_id=5900 | |entrez_id=5900 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
| − | |gene_alias=RGDS | + | |gene_alias=RGDS{{!}}RGF{{!}}RalGEF |
|gene_description=ral guanine nucleotide dissociation stimulator | |gene_description=ral guanine nucleotide dissociation stimulator | ||
|gene_id=5900 | |gene_id=5900 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:9842 | |hgnc_mgi_id=HGNC:9842 | ||
|nearest_ensembl=ENSG00000160271 | |nearest_ensembl=ENSG00000160271 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001271776 |
|nearest_refseq=NM_006266 | |nearest_refseq=NM_006266 | ||
|nearest_unigene=Hs.106185 | |nearest_unigene=Hs.106185 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=133121198 | |start=133121198 | ||
|start_of_center_position=133121203 | |start_of_center_position=133121203 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000372047.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102943.1 | |tss_id=hg_102943.1 | ||
Revision as of 17:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133121203 |
|---|---|
| End of the center position in the TSS region: | 133121204 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372047.7 |
|---|---|
| Distance: | 23 |
| Num_trans: | 10 |
| All_trans: | ENST00000372047.7:23 BC059362:-31 ENST00000372050.8:-32 NM_006266:-32 NM_001271776:-32 AF295773:34 ENST00000493438.5:43 AK074114:43 GQ129266:43 GQ129265:43 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_001271776 |
| Entrez ID: | 5900 |
| Nearest Unigene: | Hs.106185 |
| Nearest Refseq: | NM_006266 |
| Nearest Ensembl: | ENSG00000160271 |
| Gene Name: | ral guanine nucleotide dissociation stimulator |
| Gene Alias: | RGDS|RGF|RalGEF |
| Gene Description: | ral guanine nucleotide dissociation stimulator |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
