Difference between revisions of "TSS:Hg 10297.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans=AK308531:6 DQ892848:8 DQ892849:8 DQ896095:8 CR542110:10 KJ898609:10 CU692940:10 AB463629:10 BC025233:-43 BC096747:-59 AK313019:-59 BC014957:-77 ENST00000466919.1:153 | + | |all_trans=AK308531:6 DQ892848:8 DQ892849:8 DQ896095:8 CR542110:10 KJ898609:10 CU692940:10 AB463629:10 BC025233:-43 ENST00000354287.5:-57 NM_012168:-57 BC096747:-59 AK313019:-59 BC014957:-77 ENST00000466919.1:153 AF187318:-310 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=6 | |distance=6 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-46 |
|end=11654372 | |end=11654372 | ||
|end_of_center_position=11654361 | |end_of_center_position=11654361 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=26232 | |gene_id=26232 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:13581 | |hgnc_mgi_id=HGNC:13581 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304791 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=11654349 | |start=11654349 | ||
|start_of_center_position=11654360 | |start_of_center_position=11654360 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-100(CCTTTAAGAGGC,+,0.00) |
|transcript_name=AK308531 | |transcript_name=AK308531 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654360 |
|---|---|
| End of the center position in the TSS region: | 11654361 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK308531 |
|---|---|
| Distance: | 6 |
| Num_trans: | 16 |
| All_trans: | AK308531:6 DQ892848:8 DQ892849:8 DQ896095:8 CR542110:10 KJ898609:10 CU692940:10 AB463629:10 BC025233:-43 ENST00000354287.5:-57 NM_012168:-57 BC096747:-59 AK313019:-59 BC014957:-77 ENST00000466919.1:153 AF187318:-310 |
TATA-Box annotation
| Distance to TSS: | -46 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -100(CCTTTAAGAGGC,+,0.00) |
