Difference between revisions of "TSS:Hg 102977.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GTB= | |GTB= | ||
|NAGAT= | |NAGAT= | ||
| − | |all_trans= | + | |all_trans=ENST00000679909.1:0 ENST00000453660.4:0 ENST00000647353.1:0 ENST00000611156.4:0 ENST00000538324.2:0 NM_020469:0 AK302203:0 KJ896361:2 CU686922:2 JX519569:3 JX519570:3 MK568546:3 JX398332:3 JX398333:3 AF134412:3 AF134413:3 AF134414:3 AF134415:3 AF134416:3 BC069595:3 BC069605:3 BC111575:3 DQ139865:3 FR691751:3 FR691752:3 J05175:3 JN791441:3 JX398330:3 JX398331:3 KT282967:3 MK302441:3 MK144787:3 MK631949:3 MK640210:3 MK654726:3 BC069814:3 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-11 |
|end=133275232 | |end=133275232 | ||
|end_of_center_position=133275212 | |end_of_center_position=133275212 | ||
|entrez_id=28 | |entrez_id=28 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=A3GALNT | + | |gene_alias=A3GALNT{{!}}A3GALT1{{!}}GTB{{!}}NAGAT |
| − | |gene_description= | + | |gene_description=ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase |
|gene_id=28 | |gene_id=28 | ||
| − | |gene_name= | + | |gene_name=ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase |
|gene_source=HGNC:79 | |gene_source=HGNC:79 | ||
|gene_symbol=ABO | |gene_symbol=ABO | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_020469 | |nearest_refseq=NM_020469 | ||
|nearest_unigene=Hs.654423 | |nearest_unigene=Hs.654423 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=133275191 | |start=133275191 | ||
|start_of_center_position=133275211 | |start_of_center_position=133275211 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000453660. | + | |transcript_name=ENST00000679909.1 ENST00000453660.4 ENST00000647353.1 ENST00000611156.4 ENST00000538324.2 NM_020469 AK302203 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102977.1 | |tss_id=hg_102977.1 | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133275211 |
|---|---|
| End of the center position in the TSS region: | 133275212 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679909.1 ENST00000453660.4 ENST00000647353.1 ENST00000611156.4 ENST00000538324.2 NM_020469 AK302203 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000679909.1:0 ENST00000453660.4:0 ENST00000647353.1:0 ENST00000611156.4:0 ENST00000538324.2:0 NM_020469:0 AK302203:0 KJ896361:2 CU686922:2 JX519569:3 JX519570:3 MK568546:3 JX398332:3 JX398333:3 AF134412:3 AF134413:3 AF134414:3 AF134415:3 AF134416:3 BC069595:3 BC069605:3 BC111575:3 DQ139865:3 FR691751:3 FR691752:3 J05175:3 JN791441:3 JX398330:3 JX398331:3 KT282967:3 MK302441:3 MK144787:3 MK631949:3 MK640210:3 MK654726:3 BC069814:3 |
TATA-Box annotation
| Distance to TSS: | -11 |
|---|---|
| Nearest PromoterID: | NM_020469 |
| Entrez ID: | 28 |
| Nearest Unigene: | Hs.654423 |
| Nearest Refseq: | NM_020469 |
| Nearest Ensembl: | ENSG00000175164 |
| Gene Name: | ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase |
| Gene Alias: | A3GALNT|A3GALT1|GTB|NAGAT |
| Gene Description: | ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
