Difference between revisions of "TSS:Hg 10298.1"
From referenceTSS
Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
− | |all_trans=BC025233:-15 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 | + | |all_trans=BC025233:-15 ENST00000354287.5:-29 NM_012168:-29 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 AF187318:-282 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=-15 | |distance=-15 | ||
− | |distance_to_tss= | + | |distance_to_tss=-12 |
|end=11654400 | |end=11654400 | ||
|end_of_center_position=11654395 | |end_of_center_position=11654395 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
− | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=26232 | |gene_id=26232 | ||
Line 26: | Line 26: | ||
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
− | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=11654389 | |start=11654389 | ||
|start_of_center_position=11654394 | |start_of_center_position=11654394 | ||
|strand=- | |strand=- | ||
− | |tata_box= | + | |tata_box=-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00) |
|transcript_name=BC025233 | |transcript_name=BC025233 | ||
|tss_classification=yes | |tss_classification=yes |
Revision as of 17:16, 15 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 11654394 |
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End of the center position in the TSS region: | 11654395 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | BC025233 |
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Distance: | -15 |
Num_trans: | 16 |
All_trans: | BC025233:-15 ENST00000354287.5:-29 NM_012168:-29 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 AF187318:-282 |
TATA-Box annotation
Distance to TSS: | -12 |
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Nearest PromoterID: | NM_001304791 |
Entrez ID: | 93611 |
Nearest Unigene: | Hs.556006 |
Nearest Refseq: | NM_033182 |
Nearest Ensembl: | ENSG00000132879 |
Gene Name: | F-box protein 2 |
Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
Gene Description: | F-box protein 44 |
Gene Type: | protein-coding |
CpG%: | 0.165 |
GC%: | 0.771144 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00) |