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Difference between revisions of "TSS:Hg 10298.1"

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Line 4: Line 4:
 
|Fbx44=
 
|Fbx44=
 
|Fbxo6a=
 
|Fbxo6a=
|all_trans=BC025233:-15 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 uc057cgi.1:193 ENST00000354287.4:-282 uc001asj.4:-282 AF187318:-282 NM_012168:-431
+
|all_trans=BC025233:-15 ENST00000354287.5:-29 NM_012168:-29 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 AF187318:-282
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.165
 
|cpg_percent=0.165
 
|distance=-15
 
|distance=-15
|distance_to_tss=20
+
|distance_to_tss=-12
 
|end=11654400
 
|end=11654400
 
|end_of_center_position=11654395
 
|end_of_center_position=11654395
 
|entrez_id=93611
 
|entrez_id=93611
 
|gc_percent=0.771144
 
|gc_percent=0.771144
|gene_alias=FBG3
+
|gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a
 
|gene_description=F-box protein 44
 
|gene_description=F-box protein 44
 
|gene_id=26232
 
|gene_id=26232
Line 26: Line 26:
 
|nearest_refseq=NM_033182
 
|nearest_refseq=NM_033182
 
|nearest_unigene=Hs.556006
 
|nearest_unigene=Hs.556006
|num_trans=18
+
|num_trans=16
 
|species=human
 
|species=human
 
|start=11654389
 
|start=11654389
 
|start_of_center_position=11654394
 
|start_of_center_position=11654394
 
|strand=-
 
|strand=-
|tata_box="-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)"
+
|tata_box=-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)
 
|transcript_name=BC025233
 
|transcript_name=BC025233
 
|tss_classification=yes
 
|tss_classification=yes

Revision as of 17:16, 15 June 2021

Basic information about the TSS


TSS ID:hg_10298.1
Species:human
Chr:chr1
TSS Classification:yes
Start:11654389
End:11654400
Strand:-
TSS Score:1
Start of the center position in the TSS region:11654394
End of the center position in the TSS region:11654395



Gene and protein annotation


Transcript_name:BC025233
Distance:-15
GeneID:26232
HGNC/MGI_ID:HGNC:13581
UniProt_ID:
Gene_name:F-box protein 2
Gene_symbol:FBXO2
Gene_synonyms:FBX2 Fbg1 Fbs1 Nfb42
Gene_source:HGNC:13581



Transcript annotation


Transcript_name:BC025233
Distance:-15
Num_trans:16
All_trans:BC025233:-15 ENST00000354287.5:-29 NM_012168:-29 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 AF187318:-282



TATA-Box annotation


Distance to TSS:-12
Nearest PromoterID:NM_001304791
Entrez ID:93611
Nearest Unigene:Hs.556006
Nearest Refseq:NM_033182
Nearest Ensembl:ENSG00000132879
Gene Name:F-box protein 2
Gene Alias:FBG3|FBX30|FBX6A|Fbx44|Fbxo6a
Gene Description:F-box protein 44
Gene Type:protein-coding
CpG%:0.165
GC%:0.771144
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)