Difference between revisions of "TSS:Hg 102996.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC111023:0 BX647961:5 ENST00000371991.3 | + | |all_trans=BC111023:0 BX647961:5 ENST00000371991.3:-9 ENST00000371982.3:14 AF078866:-24 AF078867:-24 AK293434:24 AK300004:-25 ENST00000371989.8:-26 NM_001280789:-26 NM_033161:-26 AK299656:-26 AK303309:-26 AK316480:-26 AK295435:-29 ENST00000467910.5:33 BC018741:35 AB528538:50 DQ892024:53 DQ895216:53 AM392907:53 KJ892231:54 CU676306:54 ENST00000485435.6:-65 Y14820:76 AK315488:-84 ENST00000545297.5:-132 ENST00000613129.4:-132 ENST00000618229.4:-132 NM_001280792:-132 NM_001280791:-132 NM_001280793:-132 NM_001280790:-132 AK301737:459 AK310333:462 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=31 |
|end=133376034 | |end=133376034 | ||
|end_of_center_position=133376029 | |end_of_center_position=133376029 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11476 | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033161 |
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=133376023 | |start=133376023 | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 133376028 |
|---|---|
| End of the center position in the TSS region: | 133376029 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC111023 |
|---|---|
| Distance: | 0 |
| Num_trans: | 35 |
| All_trans: | BC111023:0 BX647961:5 ENST00000371991.3:-9 ENST00000371982.3:14 AF078866:-24 AF078867:-24 AK293434:24 AK300004:-25 ENST00000371989.8:-26 NM_001280789:-26 NM_033161:-26 AK299656:-26 AK303309:-26 AK316480:-26 AK295435:-29 ENST00000467910.5:33 BC018741:35 AB528538:50 DQ892024:53 DQ895216:53 AM392907:53 KJ892231:54 CU676306:54 ENST00000485435.6:-65 Y14820:76 AK315488:-84 ENST00000545297.5:-132 ENST00000613129.4:-132 ENST00000618229.4:-132 NM_001280792:-132 NM_001280791:-132 NM_001280793:-132 NM_001280790:-132 AK301737:459 AK310333:462 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_033161 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
