Difference between revisions of "TSS:Hg 103101.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SPATA27= | |SPATA27= | ||
|TEB2= | |TEB2= | ||
| − | |all_trans=AY884306:1 KJ900742:6 ENST00000298466.9 | + | |all_trans=ENST00000425225.2:0 NM_001101677:0 NM_001012415:0 AY884306:1 KJ900742:6 ENST00000298466.9:-34 AY902244:-34 BC031861:-34 |
|bA100C15.3= | |bA100C15.3= | ||
|bHLHe80= | |bHLHe80= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=-3 |
|end=135699494 | |end=135699494 | ||
|end_of_center_position=135699484 | |end_of_center_position=135699484 | ||
|entrez_id=402381 | |entrez_id=402381 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=C9orf157 | + | |gene_alias=C9orf157{{!}}NOHLH{{!}}ODG5{{!}}SPATA27{{!}}SPGF32{{!}}TEB2{{!}}bA100C15.3{{!}}bHLHe80 |
|gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | |gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | ||
|gene_id=402381 | |gene_id=402381 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001012415 | |nearest_refseq=NM_001012415 | ||
|nearest_unigene=Hs.120464 | |nearest_unigene=Hs.120464 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=135699473 | |start=135699473 | ||
|start_of_center_position=135699483 | |start_of_center_position=135699483 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000425225.2 NM_001101677 NM_001012415 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103101.1 | |tss_id=hg_103101.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5JUK2 |
}} | }} | ||
Revision as of 17:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135699483 |
|---|---|
| End of the center position in the TSS region: | 135699484 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000425225.2 NM_001101677 NM_001012415 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000425225.2:0 NM_001101677:0 NM_001012415:0 AY884306:1 KJ900742:6 ENST00000298466.9:-34 AY902244:-34 BC031861:-34 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001012415 |
| Entrez ID: | 402381 |
| Nearest Unigene: | Hs.120464 |
| Nearest Refseq: | NM_001012415 |
| Nearest Ensembl: | ENSG00000165643 |
| Gene Name: | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Gene Alias: | C9orf157|NOHLH|ODG5|SPATA27|SPGF32|TEB2|bA100C15.3|bHLHe80 |
| Gene Description: | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
