Difference between revisions of "TSS:Hg 103136.1"
From referenceTSS
| Line 2: | Line 2: | ||
|LIM3= | |LIM3= | ||
|M2-LHX3= | |M2-LHX3= | ||
| − | |all_trans= | + | |all_trans=AB593066:0 AF156889:10 ENST00000371746.9:-11 NM_014564:-11 ENST00000645419.1:20 AB593065:20 BC152818:127 BC156735:127 AB590758:127 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=136203178 | |end=136203178 | ||
|end_of_center_position=136203173 | |end_of_center_position=136203173 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=CPHD3 | + | |gene_alias=CPHD3{{!}}LIM3{{!}}M2-LHX3 |
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
|gene_id=8022 | |gene_id=8022 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=136203172 | |start_of_center_position=136203172 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AB593066 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103136.1 | |tss_id=hg_103136.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=F1T0D9 | + | |uniprot_id=F1T0D9 |
}} | }} | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136203172 |
|---|---|
| End of the center position in the TSS region: | 136203173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB593066 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | AB593066:0 AF156889:10 ENST00000371746.9:-11 NM_014564:-11 ENST00000645419.1:20 AB593065:20 BC152818:127 BC156735:127 AB590758:127 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_014564 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LIM homeobox 3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
