Difference between revisions of "TSS:Hg 10326.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK312907:0 ENST00000418034 | + | |all_trans=ENST00000376590.9:0 NM_005957:0 AK312907:0 ENST00000418034.1:15 AY046564:15 BC053509:26 ENST00000641446.1:-32 ENST00000641437.1:-36 ENST00000376486.3:-93 ENST00000642002.1:-133 LF357340:440 MA592917:440 ENST00000641747.1:-485 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 12: | Line 12: | ||
|gene_description=chloride voltage-gated channel 6 | |gene_description=chloride voltage-gated channel 6 | ||
|gene_id=4524 | |gene_id=4524 | ||
| − | |gene_name=methylenetetrahydrofolate reductase | + | |gene_name=methylenetetrahydrofolate reductase |
|gene_source=HGNC:7436 | |gene_source=HGNC:7436 | ||
|gene_symbol=MTHFR | |gene_symbol=MTHFR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001286 | |nearest_refseq=NM_001286 | ||
|nearest_unigene=Hs.193043 | |nearest_unigene=Hs.193043 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=11805950 | |start=11805950 | ||
|start_of_center_position=11805960 | |start_of_center_position=11805960 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK312907 | + | |transcript_name=ENST00000376590.9 NM_005957 AK312907 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10326.1 | |tss_id=hg_10326.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P42898 Q8IU67 |
}} | }} | ||
Revision as of 17:22, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11805960 |
|---|---|
| End of the center position in the TSS region: | 11805961 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376590.9 NM_005957 AK312907 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000376590.9:0 NM_005957:0 AK312907:0 ENST00000418034.1:15 AY046564:15 BC053509:26 ENST00000641446.1:-32 ENST00000641437.1:-36 ENST00000376486.3:-93 ENST00000642002.1:-133 LF357340:440 MA592917:440 ENST00000641747.1:-485 |
TATA-Box annotation
| Distance to TSS: | -136 |
|---|---|
| Nearest PromoterID: | NM_001256959 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | methylenetetrahydrofolate reductase |
| Gene Alias: | CLC-6 |
| Gene Description: | chloride voltage-gated channel 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
