Difference between revisions of "TSS:Hg 103304.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_178448:- | + | |all_trans=ENST00000409687.5:-13 NM_178448:-13 BC048267:-32 DQ150361:-44 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance=- | + | |distance=-13 |
| − | |distance_to_tss= | + | |distance_to_tss=19 |
|end=137070544 | |end=137070544 | ||
|end_of_center_position=137070538 | |end_of_center_position=137070538 | ||
|entrez_id=89958 | |entrez_id=89958 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=C9orf140 | + | |gene_alias=C9orf140{{!}}p42.3 |
|gene_description=suppressor APC domain containing 2 | |gene_description=suppressor APC domain containing 2 | ||
|gene_id=89958 | |gene_id=89958 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_178448 | |nearest_refseq=NM_178448 | ||
|nearest_unigene=Hs.19322 | |nearest_unigene=Hs.19322 | ||
| − | |num_trans= | + | |num_trans=4 |
|p42.3= | |p42.3= | ||
|species=human | |species=human | ||
| Line 28: | Line 28: | ||
|start_of_center_position=137070537 | |start_of_center_position=137070537 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_178448 | + | |transcript_name=ENST00000409687.5 NM_178448 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103304.1 | |tss_id=hg_103304.1 | ||
Revision as of 17:23, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 137070537 |
|---|---|
| End of the center position in the TSS region: | 137070538 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000409687.5 NM_178448 |
|---|---|
| Distance: | -13 |
| Num_trans: | 4 |
| All_trans: | ENST00000409687.5:-13 NM_178448:-13 BC048267:-32 DQ150361:-44 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_178448 |
| Entrez ID: | 89958 |
| Nearest Unigene: | Hs.19322 |
| Nearest Refseq: | NM_178448 |
| Nearest Ensembl: | ENSG00000186193 |
| Gene Name: | suppressor APC domain containing 2 |
| Gene Alias: | C9orf140|p42.3 |
| Gene Description: | suppressor APC domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
