Difference between revisions of "TSS:Hg 103614.1"
From referenceTSS
| Line 10: | Line 10: | ||
|HBAB= | |HBAB= | ||
|MBAB= | |MBAB= | ||
| − | |all_trans=AK310658:0 AK303435:0 BC020216:0 BC015490:11 M86609:11 U05684:13 DQ891484:14 DQ893923:14 | + | |all_trans=ENST00000380872.9:0 NM_001353:0 AK310658:0 AK303435:0 BC020216:0 BC015490:11 M86609:11 U05684:13 DQ891484:14 DQ893923:14 CU677313:16 KJ896694:16 BT007197:16 AB031083:16 DQ269985:16 ENST00000442997.5:20 S68290:25 D26124:65 ENST00000477661.1:-154 ENST00000380859.1:360 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=4963429 | |end=4963429 | ||
|end_of_center_position=4963418 | |end_of_center_position=4963418 | ||
|entrez_id=1645 | |entrez_id=1645 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=2-ALPHA-HSD | + | |gene_alias=2-ALPHA-HSD{{!}}20-ALPHA-HSD{{!}}C9{{!}}DD1{{!}}DD1/DD2{{!}}DDH{{!}}DDH1{{!}}H-37{{!}}HAKRC{{!}}HBAB{{!}}MBAB |
|gene_description=aldo-keto reductase family 1 member C1 | |gene_description=aldo-keto reductase family 1 member C1 | ||
|gene_id=1645 | |gene_id=1645 | ||
| − | |gene_name= | + | |gene_name=aldo-keto reductase family 1 member C1 |
|gene_source=HGNC:384 | |gene_source=HGNC:384 | ||
|gene_symbol=AKR1C1 | |gene_symbol=AKR1C1 | ||
| Line 32: | Line 32: | ||
|nearest_refseq=NM_001353 | |nearest_refseq=NM_001353 | ||
|nearest_unigene=Hs.460260 | |nearest_unigene=Hs.460260 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=4963406 | |start=4963406 | ||
|start_of_center_position=4963417 | |start_of_center_position=4963417 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GCTCTTATAGCC,+,0.00) |
| − | |transcript_name=AK310658 AK303435 BC020216 | + | |transcript_name=ENST00000380872.9 NM_001353 AK310658 AK303435 BC020216 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103614.1 | |tss_id=hg_103614.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4E0M1 | + | |uniprot_id=B4E0M1 Q04828 |
}} | }} | ||
Revision as of 17:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4963417 |
|---|---|
| End of the center position in the TSS region: | 4963418 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380872.9 NM_001353 AK310658 AK303435 BC020216 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000380872.9:0 NM_001353:0 AK310658:0 AK303435:0 BC020216:0 BC015490:11 M86609:11 U05684:13 DQ891484:14 DQ893923:14 CU677313:16 KJ896694:16 BT007197:16 AB031083:16 DQ269985:16 ENST00000442997.5:20 S68290:25 D26124:65 ENST00000477661.1:-154 ENST00000380859.1:360 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_001353 |
| Entrez ID: | 1645 |
| Nearest Unigene: | Hs.460260 |
| Nearest Refseq: | NM_001353 |
| Nearest Ensembl: | ENSG00000187134 |
| Gene Name: | aldo-keto reductase family 1 member C1 |
| Gene Alias: | 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB |
| Gene Description: | aldo-keto reductase family 1 member C1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCTCTTATAGCC,+,0.00) |
