Difference between revisions of "TSS:Hg 103640.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NET1A= | |NET1A= | ||
| − | |all_trans=CU690984:-18 KJ892985:-18 AB587387:-20 S82401:-24 AB209852:-105 BC053553:-111 AK299335:-115 ENST00000355029. | + | |all_trans=GQ891307:-17 CU690984:-18 KJ892985:-18 AB587387:-20 S82401:-24 AB209852:-105 BC053553:-111 AK299335:-115 ENST00000355029.9:-153 NM_001047160:-153 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance=- | + | |distance=-17 |
| − | |distance_to_tss= | + | |distance_to_tss=161 |
|end=5412726 | |end=5412726 | ||
|end_of_center_position=5412718 | |end_of_center_position=5412718 | ||
|entrez_id=10276 | |entrez_id=10276 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=ARHGEF8 | + | |gene_alias=ARHGEF8{{!}}NET1A |
|gene_description=neuroepithelial cell transforming 1 | |gene_description=neuroepithelial cell transforming 1 | ||
|gene_id=10276 | |gene_id=10276 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=5412717 | |start_of_center_position=5412717 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=GQ891307 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103640.1 | |tss_id=hg_103640.1 | ||
Revision as of 17:31, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5412717 |
|---|---|
| End of the center position in the TSS region: | 5412718 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | GQ891307 |
|---|---|
| Distance: | -17 |
| Num_trans: | 10 |
| All_trans: | GQ891307:-17 CU690984:-18 KJ892985:-18 AB587387:-20 S82401:-24 AB209852:-105 BC053553:-111 AK299335:-115 ENST00000355029.9:-153 NM_001047160:-153 |
TATA-Box annotation
| Distance to TSS: | 161 |
|---|---|
| Nearest PromoterID: | NM_001047160 |
| Entrez ID: | 10276 |
| Nearest Unigene: | Hs.25155 |
| Nearest Refseq: | NM_005863 |
| Nearest Ensembl: | ENSG00000173848 |
| Gene Name: | neuroepithelial cell transforming 1 |
| Gene Alias: | ARHGEF8|NET1A |
| Gene Description: | neuroepithelial cell transforming 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
