Difference between revisions of "TSS:Hg 103834.1"
From referenceTSS
| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| + | |all_trans=ENST00000638035.1:35 ENST00000636488.1:43 NM_001326327:144 NM_001326328:144 NM_001326326:144 ENST00000637215.1:-174 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=35 |
| − | |distance_to_tss=- | + | |distance_to_tss=-149 |
|end=10798581 | |end=10798581 | ||
|end_of_center_position=10798576 | |end_of_center_position=10798576 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name=CUGBP Elav-like family member 2 | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001326328 | |nearest_promoter_id=NM_001326328 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=10798570 | |start=10798570 | ||
|start_of_center_position=10798575 | |start_of_center_position=10798575 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000638035.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103834.1 | |tss_id=hg_103834.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=O95319 | ||
}} | }} | ||
Revision as of 17:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10798575 |
|---|---|
| End of the center position in the TSS region: | 10798576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000638035.1 |
|---|---|
| Distance: | 35 |
| Num_trans: | 6 |
| All_trans: | ENST00000638035.1:35 ENST00000636488.1:43 NM_001326327:144 NM_001326328:144 NM_001326326:144 ENST00000637215.1:-174 |
TATA-Box annotation
| Distance to TSS: | -149 |
|---|---|
| Nearest PromoterID: | NM_001326328 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGT,+,0.00) |
