Difference between revisions of "TSS:Hg 103939.1"
From referenceTSS
| Line 6: | Line 6: | ||
|NRP= | |NRP= | ||
|TFIIIA-INTP= | |TFIIIA-INTP= | ||
| − | |all_trans= | + | |all_trans=AF420371:-11 AF420372:-11 AF420373:-11 AF061034:-26 ENST00000430081.5:-63 ENST00000378752.7:-63 ENST00000378748.7:-63 BC032762:-63 ENST00000378757.6:-67 BC013876:-67 ENST00000482140.5:-73 ENST00000378747.8:-73 NM_001008212:-73 ENST00000487935.1:-77 AK303715:-78 AK316171:-100 NM_001008213:-154 NM_021980:-154 NM_001008211:-154 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-11 | |distance=-11 | ||
| − | |distance_to_tss= | + | |distance_to_tss=78 |
|end=13100246 | |end=13100246 | ||
|end_of_center_position=13100241 | |end_of_center_position=13100241 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=ALS12 | + | |gene_alias=ALS12{{!}}FIP2{{!}}GLC1E{{!}}HIP7{{!}}HYPL{{!}}NRP{{!}}TFIIIA-INTP |
|gene_description=optineurin | |gene_description=optineurin | ||
|gene_id=10133 | |gene_id=10133 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:17142 | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000123240 | |nearest_ensembl=ENSG00000123240 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001008212 |
|nearest_refseq=NM_021980 | |nearest_refseq=NM_021980 | ||
|nearest_unigene=Hs.332706 | |nearest_unigene=Hs.332706 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=13100235 | |start=13100235 | ||
|start_of_center_position=13100240 | |start_of_center_position=13100240 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AF420371 AF420372 AF420373 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103939.1 | |tss_id=hg_103939.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:38, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13100240 |
|---|---|
| End of the center position in the TSS region: | 13100241 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF420371 AF420372 AF420373 |
|---|---|
| Distance: | -11 |
| Num_trans: | 19 |
| All_trans: | AF420371:-11 AF420372:-11 AF420373:-11 AF061034:-26 ENST00000430081.5:-63 ENST00000378752.7:-63 ENST00000378748.7:-63 BC032762:-63 ENST00000378757.6:-67 BC013876:-67 ENST00000482140.5:-73 ENST00000378747.8:-73 NM_001008212:-73 ENST00000487935.1:-77 AK303715:-78 AK316171:-100 NM_001008213:-154 NM_021980:-154 NM_001008211:-154 |
TATA-Box annotation
| Distance to TSS: | 78 |
|---|---|
| Nearest PromoterID: | NM_001008212 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
