Difference between revisions of "TSS:Hg 104061.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000637053.1:-85 ENST00000421459.2:-130 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance=- | + | |distance=-85 |
|distance_to_tss=-761 | |distance_to_tss=-761 | ||
|end=17230753 | |end=17230753 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=17230745 | |start_of_center_position=17230745 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=46(ACGTCTAAAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000637053.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104061.1 | |tss_id=hg_104061.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:41, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17230745 |
|---|---|
| End of the center position in the TSS region: | 17230746 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000637053.1 |
|---|---|
| Distance: | -85 |
| Num_trans: | 2 |
| All_trans: | ENST00000637053.1:-85 ENST00000421459.2:-130 |
TATA-Box annotation
| Distance to TSS: | -761 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 46(ACGTCTAAAAAG,-,0.00) |
