Difference between revisions of "TSS:Hg 104109.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ZIP-12= | |ZIP-12= | ||
| − | |all_trans=AK295294:-8 BC094700:-8 BC047635:-44 | + | |all_trans=AK295294:-8 BC094700:-8 BC047635:-44 ENST00000377369.7:-53 NM_001145195:-53 ENST00000377371.3:-57 BC035118:-57 ENST00000377374.8:-79 AK055061:-79 ENST00000539911.5:-132 NM_001282734:-132 NM_152725:-132 NM_001282733:-132 |
|bA570F3.1= | |bA570F3.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-8 | |distance=-8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=58 |
|end=17951982 | |end=17951982 | ||
|end_of_center_position=17951977 | |end_of_center_position=17951977 | ||
|entrez_id=221074 | |entrez_id=221074 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=LZT-Hs8 | + | |gene_alias=LZT-Hs8{{!}}ZIP-12{{!}}bA570F3.1 |
|gene_description=solute carrier family 39 member 12 | |gene_description=solute carrier family 39 member 12 | ||
|gene_id=221074 | |gene_id=221074 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:20860 | |hgnc_mgi_id=HGNC:20860 | ||
|nearest_ensembl=ENSG00000148482 | |nearest_ensembl=ENSG00000148482 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001145195 |
|nearest_refseq=NM_152725 | |nearest_refseq=NM_152725 | ||
|nearest_unigene=Hs.350895 | |nearest_unigene=Hs.350895 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=17951970 | |start=17951970 | ||
|start_of_center_position=17951976 | |start_of_center_position=17951976 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-5(GGATTTAAAAGG,-,0.00) |
|transcript_name=AK295294 BC094700 | |transcript_name=AK295294 BC094700 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 17:42, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17951976 |
|---|---|
| End of the center position in the TSS region: | 17951977 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK295294 BC094700 |
|---|---|
| Distance: | -8 |
| Num_trans: | 13 |
| All_trans: | AK295294:-8 BC094700:-8 BC047635:-44 ENST00000377369.7:-53 NM_001145195:-53 ENST00000377371.3:-57 BC035118:-57 ENST00000377374.8:-79 AK055061:-79 ENST00000539911.5:-132 NM_001282734:-132 NM_152725:-132 NM_001282733:-132 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_001145195 |
| Entrez ID: | 221074 |
| Nearest Unigene: | Hs.350895 |
| Nearest Refseq: | NM_152725 |
| Nearest Ensembl: | ENSG00000148482 |
| Gene Name: | solute carrier family 39 member 12 |
| Gene Alias: | LZT-Hs8|ZIP-12|bA570F3.1 |
| Gene Description: | solute carrier family 39 member 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -5(GGATTTAAAAGG,-,0.00) |
