Difference between revisions of "TSS:Hg 104251.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PCGF4= | |PCGF4= | ||
|RNF51= | |RNF51= | ||
| − | |all_trans=ENST00000416820.5 | + | |all_trans=ENST00000416820.5:0 ENST00000602358.5:11 ENST00000602524.1:274 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4540 |
|end=22325659 | |end=22325659 | ||
|end_of_center_position=22325639 | |end_of_center_position=22325639 | ||
| Line 12: | Line 12: | ||
|flvi-2/bmi-1= | |flvi-2/bmi-1= | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=FLVI2/BMI1 | + | |gene_alias=FLVI2/BMI1{{!}}PCGF4{{!}}RNF51{{!}}flvi-2/bmi-1 |
| − | |gene_description= | + | |gene_description=BMI1 proto-oncogene, polycomb ring finger |
| − | |gene_id= | + | |gene_id=648 |
| − | |gene_name= | + | |gene_name=BMI1 proto-oncogene, polycomb ring finger |
| − | |gene_source=HGNC:1066 | + | |gene_source=HGNC:1066 |
| − | |gene_symbol= | + | |gene_symbol=BMI1 |
|gene_synonyms=RNF51 | |gene_synonyms=RNF51 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC:1066 | + | |hgnc_mgi_id=HGNC:1066 |
|nearest_ensembl=ENSG00000168283 | |nearest_ensembl=ENSG00000168283 | ||
|nearest_promoter_id=NM_005180 | |nearest_promoter_id=NM_005180 | ||
|nearest_refseq=NM_005180 | |nearest_refseq=NM_005180 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=22325618 | |start=22325618 | ||
|start_of_center_position=22325638 | |start_of_center_position=22325638 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000416820.5 | + | |transcript_name=ENST00000416820.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104251.1 | |tss_id=hg_104251.1 | ||
Revision as of 17:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22325638 |
|---|---|
| End of the center position in the TSS region: | 22325639 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000416820.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000416820.5:0 ENST00000602358.5:11 ENST00000602524.1:274 |
TATA-Box annotation
| Distance to TSS: | 4540 |
|---|---|
| Nearest PromoterID: | NM_005180 |
| Entrez ID: | 648 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_005180 |
| Nearest Ensembl: | ENSG00000168283 |
| Gene Name: | BMI1 proto-oncogene, polycomb ring finger |
| Gene Alias: | FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 |
| Gene Description: | BMI1 proto-oncogene, polycomb ring finger |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
