Difference between revisions of "TSS:Hg 104487.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRO1741= | |PRO1741= | ||
|Wwp4= | |Wwp4= | ||
| − | |all_trans=BC001654:78 ENST00000347934.8:206 | + | |all_trans=ENST00000354911.9:11 NM_016628:11 NM_100486:11 BC001654:78 ENST00000347934.8:206 ENST00000420266.6:264 BC001026:-301 ENST00000375646.5:-313 ENST00000679570.1:-318 NM_100264:-318 ENST00000528491.5:-321 ENST00000681112.1:-321 AK225846:-322 ENST00000526722.1:-324 ENST00000628285.3:-326 AK055852:-326 ENST00000651598.1:-329 ENST00000651885.1:393 AK290174:393 ENST00000651441.1:394 AK223600:397 BC004258:398 ENST00000679398.1:399 ENST00000424454.5:433 AF116666:433 JF432760:471 KJ902580:471 AB590052:473 ENST00000530865.5:490 AK297460:490 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=11 |
| − | |distance_to_tss=- | + | |distance_to_tss=-16 |
|end=28533107 | |end=28533107 | ||
|end_of_center_position=28533102 | |end_of_center_position=28533102 | ||
|entrez_id=51322 | |entrez_id=51322 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=BM-016 | + | |gene_alias=BM-016{{!}}DESSH{{!}}PRO1741{{!}}Wwp4 |
|gene_description=WW domain containing adaptor with coiled-coil | |gene_description=WW domain containing adaptor with coiled-coil | ||
| − | |gene_name=WAC | + | |gene_id=51322 |
| + | |gene_name=WW domain containing adaptor with coiled-coil | ||
| + | |gene_source=HGNC:17327 | ||
| + | |gene_symbol=WAC | ||
| + | |gene_synonyms=BM-016 FLJ31290 MGC10753 PRO1741 Wwp4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17327 | ||
|nearest_ensembl=ENSG00000095787 | |nearest_ensembl=ENSG00000095787 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_100486 |
|nearest_refseq=NM_016628 | |nearest_refseq=NM_016628 | ||
|nearest_unigene=Hs.743224 | |nearest_unigene=Hs.743224 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=28533096 | |start=28533096 | ||
|start_of_center_position=28533101 | |start_of_center_position=28533101 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000354911.9 NM_016628 NM_100486 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104487.1 | |tss_id=hg_104487.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q9BTA9 | ||
}} | }} | ||
Revision as of 17:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 28533101 |
|---|---|
| End of the center position in the TSS region: | 28533102 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000354911.9 NM_016628 NM_100486 |
|---|---|
| Distance: | 11 |
| Num_trans: | 30 |
| All_trans: | ENST00000354911.9:11 NM_016628:11 NM_100486:11 BC001654:78 ENST00000347934.8:206 ENST00000420266.6:264 BC001026:-301 ENST00000375646.5:-313 ENST00000679570.1:-318 NM_100264:-318 ENST00000528491.5:-321 ENST00000681112.1:-321 AK225846:-322 ENST00000526722.1:-324 ENST00000628285.3:-326 AK055852:-326 ENST00000651598.1:-329 ENST00000651885.1:393 AK290174:393 ENST00000651441.1:394 AK223600:397 BC004258:398 ENST00000679398.1:399 ENST00000424454.5:433 AF116666:433 JF432760:471 KJ902580:471 AB590052:473 ENST00000530865.5:490 AK297460:490 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_100486 |
| Entrez ID: | 51322 |
| Nearest Unigene: | Hs.743224 |
| Nearest Refseq: | NM_016628 |
| Nearest Ensembl: | ENSG00000095787 |
| Gene Name: | WW domain containing adaptor with coiled-coil |
| Gene Alias: | BM-016|DESSH|PRO1741|Wwp4 |
| Gene Description: | WW domain containing adaptor with coiled-coil |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
