Difference between revisions of "TSS:Hg 10457.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MCH6= | |MCH6= | ||
|PPP1R56= | |PPP1R56= | ||
| − | |all_trans=ENST00000400777.7:0 ENST00000474305.2:0 ENST00000440484.1:0 ENST00000546969.1:0 | + | |all_trans=ENST00000333868.10:0 ENST00000400777.7:0 ENST00000474305.2:0 ENST00000440484.1:0 ENST00000546969.1:0 NM_001229:0 U60521:0 BC002452:0 AY732490:0 AB015653:0 AK292111:0 AK292080:0 U56390:0 AF093130:0 AB020979:0 AF110376:0 AJ781267:0 HQ447255:0 KJ890829:0 BT006911:0 DQ891693:0 AB590140:0 CU675417:0 BC006463:-26 ENST00000348549.9:-78 ENST00000546424.5:-176 NM_001278054:-176 NR_102733:-176 NR_102732:-176 AB209147:-176 ENST00000375890.8:-457 AK303743:-457 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-10 |
|end=15524269 | |end=15524269 | ||
|end_of_center_position=15524226 | |end_of_center_position=15524226 | ||
|entrez_id=842 | |entrez_id=842 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=APAF-3 | + | |gene_alias=APAF-3{{!}}APAF3{{!}}ICE-LAP6{{!}}MCH6{{!}}PPP1R56 |
|gene_description=caspase 9 | |gene_description=caspase 9 | ||
|gene_id=842 | |gene_id=842 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:1511 | |hgnc_mgi_id=HGNC:1511 | ||
|nearest_ensembl=ENSG00000132906 | |nearest_ensembl=ENSG00000132906 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001229 |
|nearest_refseq=NM_001229 | |nearest_refseq=NM_001229 | ||
|nearest_unigene=Hs.329502 | |nearest_unigene=Hs.329502 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=15524181 | |start=15524181 | ||
|start_of_center_position=15524225 | |start_of_center_position=15524225 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000400777.7 ENST00000474305.2 ENST00000440484.1 ENST00000546969.1 | + | |transcript_name=ENST00000333868.10 ENST00000400777.7 ENST00000474305.2 ENST00000440484.1 ENST00000546969.1 NM_001229 U60521 BC002452 AY732490 AB015653 AK292111 AK292080 U56390 AF093130 AB020979 AF110376 AJ781267 HQ447255 KJ890829 BT006911 DQ891693 AB590140 CU675417 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10457.1 | |tss_id=hg_10457.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A8K7R5 A8K7U6 F8VWA5 H0Y3S8 Q5JRU8 Q6EV95 | + | |uniprot_id=A8K7R5 A8K7U6 F8VWA5 H0Y3S8 P55211 Q5JRU8 Q6EV95 |
}} | }} | ||
Revision as of 17:53, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15524225 |
|---|---|
| End of the center position in the TSS region: | 15524226 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000333868.10 ENST00000400777.7 ENST00000474305.2 ENST00000440484.1 ENST00000546969.1 NM_001229 U60521 BC002452 AY732490 AB015653 AK292111 AK292080 U56390 AF093130 AB020979 AF110376 AJ781267 HQ447255 KJ890829 BT006911 DQ891693 AB590140 CU675417 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000333868.10:0 ENST00000400777.7:0 ENST00000474305.2:0 ENST00000440484.1:0 ENST00000546969.1:0 NM_001229:0 U60521:0 BC002452:0 AY732490:0 AB015653:0 AK292111:0 AK292080:0 U56390:0 AF093130:0 AB020979:0 AF110376:0 AJ781267:0 HQ447255:0 KJ890829:0 BT006911:0 DQ891693:0 AB590140:0 CU675417:0 BC006463:-26 ENST00000348549.9:-78 ENST00000546424.5:-176 NM_001278054:-176 NR_102733:-176 NR_102732:-176 AB209147:-176 ENST00000375890.8:-457 AK303743:-457 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001229 |
| Entrez ID: | 842 |
| Nearest Unigene: | Hs.329502 |
| Nearest Refseq: | NM_001229 |
| Nearest Ensembl: | ENSG00000132906 |
| Gene Name: | caspase 9 |
| Gene Alias: | APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 |
| Gene Description: | caspase 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
