Difference between revisions of "TSS:Hg 104686.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CCNX= | |CCNX= | ||
|CFP1= | |CFP1= | ||
| − | |all_trans=AK314666:0 | + | |all_trans=ENST00000374704.8:0 NM_001282854:0 NM_145012:0 AK314666:0 ENST00000265375.13:325 ENST00000339497.7:325 NM_001282853:325 NM_001282852:325 AF413522:325 AY504868:325 LF385229:325 MA620806:325 AK303283:471 AL834355:478 BC094815:491 BC069224:499 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=35336549 | |end=35336549 | ||
|end_of_center_position=35336518 | |end_of_center_position=35336518 | ||
|entrez_id=219771 | |entrez_id=219771 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=C10orf9 | + | |gene_alias=C10orf9{{!}}CBCP1{{!}}CCNX{{!}}CFP1 |
|gene_description=cyclin Y | |gene_description=cyclin Y | ||
|gene_id=219771 | |gene_id=219771 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23354 | |hgnc_mgi_id=HGNC:23354 | ||
|nearest_ensembl=ENSG00000108100 | |nearest_ensembl=ENSG00000108100 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282854 |
|nearest_refseq=NM_145012 | |nearest_refseq=NM_145012 | ||
|nearest_unigene=Hs.14745 | |nearest_unigene=Hs.14745 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=35336486 | |start=35336486 | ||
|start_of_center_position=35336517 | |start_of_center_position=35336517 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK314666 | + | |transcript_name=ENST00000374704.8 NM_001282854 NM_145012 AK314666 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104686.1 | |tss_id=hg_104686.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B2RBH6 | + | |uniprot_id=B2RBH6 Q8ND76 |
}} | }} | ||
Revision as of 17:56, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35336517 |
|---|---|
| End of the center position in the TSS region: | 35336518 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374704.8 NM_001282854 NM_145012 AK314666 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000374704.8:0 NM_001282854:0 NM_145012:0 AK314666:0 ENST00000265375.13:325 ENST00000339497.7:325 NM_001282853:325 NM_001282852:325 AF413522:325 AY504868:325 LF385229:325 MA620806:325 AK303283:471 AL834355:478 BC094815:491 BC069224:499 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_001282854 |
| Entrez ID: | 219771 |
| Nearest Unigene: | Hs.14745 |
| Nearest Refseq: | NM_145012 |
| Nearest Ensembl: | ENSG00000108100 |
| Gene Name: | cyclin Y |
| Gene Alias: | C10orf9|CBCP1|CCNX|CFP1 |
| Gene Description: | cyclin Y |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
