Difference between revisions of "TSS:Hg 104840.1"
From referenceTSS
| Line 7: | Line 7: | ||
|SAPK1= | |SAPK1= | ||
|SAPK1c= | |SAPK1c= | ||
| − | |all_trans=ENST00000429041. | + | |all_trans=ENST00000429041.6:0 ENST00000374189.5:0 NM_139046:0 NM_139049:0 NM_001323320:0 NM_001323325:0 NM_001323324:0 NM_001323323:0 NM_001323322:0 NM_001323326:0 NM_001323328:0 NM_001323327:0 NM_001323330:0 NM_001323331:0 NM_001323329:0 NM_001323321:0 NM_001323302:0 NR_136585:0 NR_136584:0 NR_136583:0 ENST00000432379.5:-6 ENST00000395611.7:-22 NM_001278547:-22 AK292523:50 ENST00000374179.8:60 ENST00000426557.5:333 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=48306693 | |end=48306693 | ||
|end_of_center_position=48306677 | |end_of_center_position=48306677 | ||
|entrez_id=5599 | |entrez_id=5599 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=JNK | + | |gene_alias=JNK{{!}}JNK-46{{!}}JNK1{{!}}JNK1A2{{!}}JNK21B1/2{{!}}PRKM8{{!}}SAPK1{{!}}SAPK1c |
|gene_description=mitogen-activated protein kinase 8 | |gene_description=mitogen-activated protein kinase 8 | ||
|gene_id=5599 | |gene_id=5599 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:6881 | |hgnc_mgi_id=HGNC:6881 | ||
|nearest_ensembl=ENSG00000107643 | |nearest_ensembl=ENSG00000107643 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323328 |
|nearest_refseq=NM_002750 | |nearest_refseq=NM_002750 | ||
|nearest_unigene=Hs.138211 | |nearest_unigene=Hs.138211 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=48306660 | |start=48306660 | ||
|start_of_center_position=48306676 | |start_of_center_position=48306676 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000429041. | + | |transcript_name=ENST00000429041.6 ENST00000374189.5 NM_139046 NM_139049 NM_001323320 NM_001323325 NM_001323324 NM_001323323 NM_001323322 NM_001323326 NM_001323328 NM_001323327 NM_001323330 NM_001323331 NM_001323329 NM_001323321 NM_001323302 NR_136585 NR_136584 NR_136583 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104840.1 | |tss_id=hg_104840.1 | ||
Revision as of 18:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48306676 |
|---|---|
| End of the center position in the TSS region: | 48306677 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429041.6 ENST00000374189.5 NM_139046 NM_139049 NM_001323320 NM_001323325 NM_001323324 NM_001323323 NM_001323322 NM_001323326 NM_001323328 NM_001323327 NM_001323330 NM_001323331 NM_001323329 NM_001323321 NM_001323302 NR_136585 NR_136584 NR_136583 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000429041.6:0 ENST00000374189.5:0 NM_139046:0 NM_139049:0 NM_001323320:0 NM_001323325:0 NM_001323324:0 NM_001323323:0 NM_001323322:0 NM_001323326:0 NM_001323328:0 NM_001323327:0 NM_001323330:0 NM_001323331:0 NM_001323329:0 NM_001323321:0 NM_001323302:0 NR_136585:0 NR_136584:0 NR_136583:0 ENST00000432379.5:-6 ENST00000395611.7:-22 NM_001278547:-22 AK292523:50 ENST00000374179.8:60 ENST00000426557.5:333 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001323328 |
| Entrez ID: | 5599 |
| Nearest Unigene: | Hs.138211 |
| Nearest Refseq: | NM_002750 |
| Nearest Ensembl: | ENSG00000107643 |
| Gene Name: | mitogen-activated protein kinase 8 |
| Gene Alias: | JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c |
| Gene Description: | mitogen-activated protein kinase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
