Difference between revisions of "TSS:Hg 104897.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMS1A2= | |CMS1A2= | ||
|CMS6= | |CMS6= | ||
| + | |all_trans=ENST00000638282.1:-27 ENST00000640822.1:-156 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-27 |
|distance_to_tss=23519 | |distance_to_tss=23519 | ||
|end=49637556 | |end=49637556 | ||
| Line 11: | Line 12: | ||
|entrez_id=1103 | |entrez_id=1103 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=CHOACTASE | + | |gene_alias=CHOACTASE{{!}}CMS1A{{!}}CMS1A2{{!}}CMS6 |
|gene_description=choline O-acetyltransferase | |gene_description=choline O-acetyltransferase | ||
| − | |gene_name=CHAT | + | |gene_id=1103 |
| + | |gene_name=choline O-acetyltransferase | ||
| + | |gene_source=HGNC:1912 | ||
| + | |gene_symbol=CHAT | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1912 | ||
|nearest_ensembl=ENSG00000070748 | |nearest_ensembl=ENSG00000070748 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001142929 |
|nearest_refseq=NM_020549 | |nearest_refseq=NM_020549 | ||
|nearest_unigene=Hs.302002 | |nearest_unigene=Hs.302002 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=49637555 | |start=49637555 | ||
|start_of_center_position=49637555 | |start_of_center_position=49637555 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000638282.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104897.1 | |tss_id=hg_104897.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A1W2PRG4 | ||
}} | }} | ||
Revision as of 18:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49637555 |
|---|---|
| End of the center position in the TSS region: | 49637556 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000638282.1 |
|---|---|
| Distance: | -27 |
| Num_trans: | 2 |
| All_trans: | ENST00000638282.1:-27 ENST00000640822.1:-156 |
TATA-Box annotation
| Distance to TSS: | 23519 |
|---|---|
| Nearest PromoterID: | NM_001142929 |
| Entrez ID: | 1103 |
| Nearest Unigene: | Hs.302002 |
| Nearest Refseq: | NM_020549 |
| Nearest Ensembl: | ENSG00000070748 |
| Gene Name: | choline O-acetyltransferase |
| Gene Alias: | CHOACTASE|CMS1A|CMS1A2|CMS6 |
| Gene Description: | choline O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
