Difference between revisions of "TSS:Hg 105423.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|USH1D= | |USH1D= | ||
| − | |all_trans= | + | |all_trans=ENST00000224721.12:0 ENST00000398809.9:0 ENST00000461841.7:0 ENST00000299366.11:0 ENST00000644511.1:0 NM_022124:0 NM_052836:0 NM_001171930:0 NM_001171931:0 NM_001171932:0 BC011570:0 LF384638:0 MA620215:0 BC032581:0 BC139903:0 BC108254:0 ENST00000616684.4:3 BC065284:3 BC136976:110 BC136977:111 AY358617:325 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 10: | Line 10: | ||
|entrez_id=64072 | |entrez_id=64072 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=CDHR23 | + | |gene_alias=CDHR23{{!}}PITA5{{!}}USH1D |
|gene_description=cadherin related 23 | |gene_description=cadherin related 23 | ||
|gene_id=64072 | |gene_id=64072 | ||
| − | |gene_name=cadherin | + | |gene_name=cadherin related 23 |
|gene_source=HGNC:13733 | |gene_source=HGNC:13733 | ||
|gene_symbol=CDH23 | |gene_symbol=CDH23 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:13733 | |hgnc_mgi_id=HGNC:13733 | ||
|nearest_ensembl=ENSG00000107736 | |nearest_ensembl=ENSG00000107736 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001171932 |
|nearest_refseq=NM_022124 | |nearest_refseq=NM_022124 | ||
|nearest_unigene=Hs.656032 | |nearest_unigene=Hs.656032 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=71396907 | |start=71396907 | ||
|start_of_center_position=71396933 | |start_of_center_position=71396933 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000398809. | + | |transcript_name=ENST00000224721.12 ENST00000398809.9 ENST00000461841.7 ENST00000299366.11 ENST00000644511.1 NM_022124 NM_052836 NM_001171930 NM_001171931 NM_001171932 BC011570 LF384638 MA620215 BC032581 BC139903 BC108254 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105423.1 | |tss_id=hg_105423.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0A0MS94 A0A2R8YEM1 A5D6V9 Q32P55 Q8N5B3 Q9H251 |
}} | }} | ||
Revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71396933 |
|---|---|
| End of the center position in the TSS region: | 71396934 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000224721.12 ENST00000398809.9 ENST00000461841.7 ENST00000299366.11 ENST00000644511.1 NM_022124 NM_052836 NM_001171930 NM_001171931 NM_001171932 BC011570 LF384638 MA620215 BC032581 BC139903 BC108254 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000224721.12:0 ENST00000398809.9:0 ENST00000461841.7:0 ENST00000299366.11:0 ENST00000644511.1:0 NM_022124:0 NM_052836:0 NM_001171930:0 NM_001171931:0 NM_001171932:0 BC011570:0 LF384638:0 MA620215:0 BC032581:0 BC139903:0 BC108254:0 ENST00000616684.4:3 BC065284:3 BC136976:110 BC136977:111 AY358617:325 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001171932 |
| Entrez ID: | 64072 |
| Nearest Unigene: | Hs.656032 |
| Nearest Refseq: | NM_022124 |
| Nearest Ensembl: | ENSG00000107736 |
| Gene Name: | cadherin related 23 |
| Gene Alias: | CDHR23|PITA5|USH1D |
| Gene Description: | cadherin related 23 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
