Difference between revisions of "TSS:Hg 105484.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CENP-27= | |CENP-27= | ||
|MSAG= | |MSAG= | ||
| − | |all_trans=ENST00000615507.4:0 ENST00000621663.4:0 | + | |all_trans=ENST00000615507.4:0 ENST00000621663.4:0 ENST00000299381.5:0 ENST00000478193.5:0 NM_001242548:0 NM_001242546:0 NM_001366791:0 NM_001242547:0 NR_038392:0 NR_038391:0 NM_173473:0 EU552924:0 BC009530:0 LF208756:-17 MA444333:-17 LF322521:143 MA558098:143 |
|bA570G20.3= | |bA570G20.3= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=72216072 | |end=72216072 | ||
|end_of_center_position=72216029 | |end_of_center_position=72216029 | ||
|entrez_id=119504 | |entrez_id=119504 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=APC16 | + | |gene_alias=APC16{{!}}C10orf104{{!}}CENP-27{{!}}MSAG{{!}}bA570G20.3 |
|gene_description=anaphase promoting complex subunit 16 | |gene_description=anaphase promoting complex subunit 16 | ||
|gene_id=119504 | |gene_id=119504 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:26976 | |hgnc_mgi_id=HGNC:26976 | ||
|nearest_ensembl=ENSG00000166295 | |nearest_ensembl=ENSG00000166295 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001242547 |
|nearest_refseq=NM_173473 | |nearest_refseq=NM_173473 | ||
|nearest_unigene=Hs.426296 | |nearest_unigene=Hs.426296 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=72215984 | |start=72215984 | ||
|start_of_center_position=72216028 | |start_of_center_position=72216028 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000615507.4 ENST00000621663.4 ENST00000478193.5 | + | |transcript_name=ENST00000615507.4 ENST00000621663.4 ENST00000299381.5 ENST00000478193.5 NM_001242548 NM_001242546 NM_001366791 NM_001242547 NR_038392 NR_038391 NM_173473 EU552924 BC009530 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105484.1 | |tss_id=hg_105484.1 | ||
Revision as of 18:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72216028 |
|---|---|
| End of the center position in the TSS region: | 72216029 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000615507.4 ENST00000621663.4 ENST00000299381.5 ENST00000478193.5 NM_001242548 NM_001242546 NM_001366791 NM_001242547 NR_038392 NR_038391 NM_173473 EU552924 BC009530 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000615507.4:0 ENST00000621663.4:0 ENST00000299381.5:0 ENST00000478193.5:0 NM_001242548:0 NM_001242546:0 NM_001366791:0 NM_001242547:0 NR_038392:0 NR_038391:0 NM_173473:0 EU552924:0 BC009530:0 LF208756:-17 MA444333:-17 LF322521:143 MA558098:143 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001242547 |
| Entrez ID: | 119504 |
| Nearest Unigene: | Hs.426296 |
| Nearest Refseq: | NM_173473 |
| Nearest Ensembl: | ENSG00000166295 |
| Gene Name: | anaphase promoting complex subunit 16 |
| Gene Alias: | APC16|C10orf104|CENP-27|MSAG|bA570G20.3 |
| Gene Description: | anaphase promoting complex subunit 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
