Difference between revisions of "TSS:Hg 105539.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000345254.9:0 ENST00000465076.5:0 ENST00000339365.2:0 ENST00000635550.1:0 NM_004922:0 NM_198597:0 AK303085:0 AK298598:0 AK316451:0 BC018928:0 AL832110:0 AK309918:0 AK299826:0 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=73744432 | |end=73744432 | ||
|end_of_center_position=73744390 | |end_of_center_position=73744390 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=SEC24 homolog C, COPII coat complex component |
|gene_id=9632 | |gene_id=9632 | ||
| − | |gene_name= | + | |gene_name=SEC24 homolog C, COPII coat complex component |
|gene_source=HGNC:10705 | |gene_source=HGNC:10705 | ||
|gene_symbol=SEC24C | |gene_symbol=SEC24C | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_004922 | |nearest_refseq=NM_004922 | ||
|nearest_unigene=Hs.81964 | |nearest_unigene=Hs.81964 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=73744347 | |start=73744347 | ||
|start_of_center_position=73744389 | |start_of_center_position=73744389 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000465076.5 | + | |transcript_name=ENST00000345254.9 ENST00000465076.5 ENST00000339365.2 ENST00000635550.1 NM_004922 NM_198597 AK303085 AK298598 AK316451 BC018928 AL832110 AK309918 AK299826 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105539.1 | |tss_id=hg_105539.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024QZM6 B4DQ22 B4DSN3 B7ZAY6 G5EA31 P53992 | + | |uniprot_id=A0A024QZM6 A0A0U1RR58 B4DQ22 B4DSN3 B7ZAY6 G5EA31 P53992 |
}} | }} | ||
Revision as of 18:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73744389 |
|---|---|
| End of the center position in the TSS region: | 73744390 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000345254.9 ENST00000465076.5 ENST00000339365.2 ENST00000635550.1 NM_004922 NM_198597 AK303085 AK298598 AK316451 BC018928 AL832110 AK309918 AK299826 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000345254.9:0 ENST00000465076.5:0 ENST00000339365.2:0 ENST00000635550.1:0 NM_004922:0 NM_198597:0 AK303085:0 AK298598:0 AK316451:0 BC018928:0 AL832110:0 AK309918:0 AK299826:0 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_004922 |
| Entrez ID: | 9632 |
| Nearest Unigene: | Hs.81964 |
| Nearest Refseq: | NM_004922 |
| Nearest Ensembl: | ENSG00000176986 |
| Gene Name: | SEC24 homolog C, COPII coat complex component |
| Gene Alias: | - |
| Gene Description: | SEC24 homolog C, COPII coat complex component |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
