Difference between revisions of "TSS:Hg 105574.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MV= | |MV= | ||
|MVCL= | |MVCL= | ||
| − | |all_trans=ENST00000624354.3 | + | |all_trans=ENST00000624354.3:0 ENST00000372755.7:0 ENST00000478896.2:0 ENST00000211998.10:0 NM_003373:0 NM_014000:0 AK304823:0 EU794673:0 LF384967:0 MA620544:0 AK300280:0 AK296509:0 LF333168:0 MA568745:0 BC099919:0 BC039174:0 GQ900900:0 M33308:26 LF209953:-42 MA445530:-42 AB385172:65 DQ894680:69 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=73998139 | |end=73998139 | ||
|end_of_center_position=73998123 | |end_of_center_position=73998123 | ||
|entrez_id=7414 | |entrez_id=7414 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=CMD1W | + | |gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL |
|gene_description=vinculin | |gene_description=vinculin | ||
|gene_id=7414 | |gene_id=7414 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:12665 | |hgnc_mgi_id=HGNC:12665 | ||
|nearest_ensembl=ENSG00000035403 | |nearest_ensembl=ENSG00000035403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003373 |
|nearest_refseq=NM_003373 | |nearest_refseq=NM_003373 | ||
|nearest_unigene=Hs.643896 | |nearest_unigene=Hs.643896 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=73998105 | |start=73998105 | ||
|start_of_center_position=73998122 | |start_of_center_position=73998122 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000624354.3 | + | |transcript_name=ENST00000624354.3 ENST00000372755.7 ENST00000478896.2 ENST00000211998.10 NM_003373 NM_014000 AK304823 EU794673 LF384967 MA620544 AK300280 AK296509 LF333168 MA568745 BC099919 BC039174 GQ900900 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105574.1 | |tss_id=hg_105574.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024QZN4 A0A096LPE1 B4DKC9 B4DTM7 B4E3Q9 P18206 V9HWK2 | + | |uniprot_id=A0A024QZN4 A0A096LPE1 A0A384NYN5 B4DKC9 B4DTM7 B4E3Q9 P18206 V9HWK2 |
}} | }} | ||
Revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73998122 |
|---|---|
| End of the center position in the TSS region: | 73998123 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000624354.3 ENST00000372755.7 ENST00000478896.2 ENST00000211998.10 NM_003373 NM_014000 AK304823 EU794673 LF384967 MA620544 AK300280 AK296509 LF333168 MA568745 BC099919 BC039174 GQ900900 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000624354.3:0 ENST00000372755.7:0 ENST00000478896.2:0 ENST00000211998.10:0 NM_003373:0 NM_014000:0 AK304823:0 EU794673:0 LF384967:0 MA620544:0 AK300280:0 AK296509:0 LF333168:0 MA568745:0 BC099919:0 BC039174:0 GQ900900:0 M33308:26 LF209953:-42 MA445530:-42 AB385172:65 DQ894680:69 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_003373 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | vinculin |
| Gene Alias: | CMD1W|CMH15|HEL114|MV|MVCL |
| Gene Description: | vinculin |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
