Difference between revisions of "TSS:Hg 10561.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MAGP-1= | |MAGP-1= | ||
|MAGP1= | |MAGP1= | ||
| − | |all_trans= | + | |all_trans=NM_001135248:404 BC015039:404 AK222751:442 AK301655:-446 ENST00000476788.5:450 NM_017459:-454 NM_001135247:-454 ENST00000490075.5:461 BC028033:461 ENST00000375535.4:462 NM_002403:462 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=404 |
|distance_to_tss=-429 | |distance_to_tss=-429 | ||
|end=16981132 | |end=16981132 | ||
| Line 11: | Line 11: | ||
|entrez_id=4237 | |entrez_id=4237 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=MAGP | + | |gene_alias=MAGP{{!}}MAGP-1{{!}}MAGP1 |
| − | |gene_description= | + | |gene_description=microfibril associated protein 2 |
|gene_id=4237 | |gene_id=4237 | ||
| − | |gene_name= | + | |gene_name=microfibril associated protein 2 |
|gene_source=HGNC:7033 | |gene_source=HGNC:7033 | ||
|gene_symbol=MFAP2 | |gene_symbol=MFAP2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7033 | |hgnc_mgi_id=HGNC:7033 | ||
|nearest_ensembl=ENSG00000117122 | |nearest_ensembl=ENSG00000117122 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001135248 |
|nearest_refseq=NM_002403 | |nearest_refseq=NM_002403 | ||
|nearest_unigene=Hs.389137 | |nearest_unigene=Hs.389137 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=16981081 | |start=16981081 | ||
|start_of_center_position=16981106 | |start_of_center_position=16981106 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-48(CTCTAGAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_001135248 BC015039 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10561.1 | |tss_id=hg_10561.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P55001 |
}} | }} | ||
Revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16981106 |
|---|---|
| End of the center position in the TSS region: | 16981107 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001135248 BC015039 |
|---|---|
| Distance: | 404 |
| Num_trans: | 11 |
| All_trans: | NM_001135248:404 BC015039:404 AK222751:442 AK301655:-446 ENST00000476788.5:450 NM_017459:-454 NM_001135247:-454 ENST00000490075.5:461 BC028033:461 ENST00000375535.4:462 NM_002403:462 |
TATA-Box annotation
| Distance to TSS: | -429 |
|---|---|
| Nearest PromoterID: | NM_001135248 |
| Entrez ID: | 4237 |
| Nearest Unigene: | Hs.389137 |
| Nearest Refseq: | NM_002403 |
| Nearest Ensembl: | ENSG00000117122 |
| Gene Name: | microfibril associated protein 2 |
| Gene Alias: | MAGP|MAGP-1|MAGP1 |
| Gene Description: | microfibril associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -48(CTCTAGAAAAGG,-,0.00) |
