Difference between revisions of "TSS:Hg 105610.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SMSr= | |SMSr= | ||
| − | |all_trans= | + | |all_trans=ENST00000671730.1:0 LP895198:-7 ENST00000671800.1:101 BC080593:101 LF384969:101 MA620546:101 ENST00000542569.6:122 NM_001174156:122 NM_144660:122 ENST00000649316.2:158 ENST00000372687.4:175 AK057811:175 EU668332:175 GQ472208:175 LF333468:186 MA569045:186 LF333469:463 MA569046:463 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-150 |
|end=75111534 | |end=75111534 | ||
|end_of_center_position=75111506 | |end_of_center_position=75111506 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=HEL-177 | + | |gene_alias=HEL-177{{!}}SMSr |
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
|gene_id=142891 | |gene_id=142891 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26320 | |hgnc_mgi_id=HGNC:26320 | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_144660 |
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=75111477 | |start=75111477 | ||
|start_of_center_position=75111505 | |start_of_center_position=75111505 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000671730.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105610.1 | |tss_id=hg_105610.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A5F9ZGS6 |
}} | }} | ||
Revision as of 18:18, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 75111505 |
|---|---|
| End of the center position in the TSS region: | 75111506 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000671730.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000671730.1:0 LP895198:-7 ENST00000671800.1:101 BC080593:101 LF384969:101 MA620546:101 ENST00000542569.6:122 NM_001174156:122 NM_144660:122 ENST00000649316.2:158 ENST00000372687.4:175 AK057811:175 EU668332:175 GQ472208:175 LF333468:186 MA569045:186 LF333469:463 MA569046:463 |
TATA-Box annotation
| Distance to TSS: | -150 |
|---|---|
| Nearest PromoterID: | NM_144660 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | sterile alpha motif domain containing 8 |
| Gene Alias: | HEL-177|SMSr |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
