Difference between revisions of "TSS:Hg 10567.1"
From referenceTSS
| Line 3: | Line 3: | ||
|KRPPD= | |KRPPD= | ||
|PARK9= | |PARK9= | ||
| − | |all_trans=ENST00000475049.5 | + | |all_trans=ENST00000475049.5:-24 ENST00000485092.5:83 LF357200:221 MA592777:221 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-24 | |distance=-24 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-11199 |
|end=17023136 | |end=17023136 | ||
|end_of_center_position=17023128 | |end_of_center_position=17023128 | ||
|entrez_id=23400 | |entrez_id=23400 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=CLN12 | + | |gene_alias=CLN12{{!}}HSA9947{{!}}KRPPD{{!}}PARK9{{!}}SPG78 |
| − | |gene_description=ATPase 13A2 | + | |gene_description=ATPase cation transporting 13A2 |
|gene_id=6390 | |gene_id=6390 | ||
|gene_name=succinate dehydrogenase complex iron sulfur subunit B | |gene_name=succinate dehydrogenase complex iron sulfur subunit B | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:10681 | |hgnc_mgi_id=HGNC:10681 | ||
|nearest_ensembl=ENSG00000159363 | |nearest_ensembl=ENSG00000159363 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_022089 |
|nearest_refseq=NM_022089 | |nearest_refseq=NM_022089 | ||
|nearest_unigene=Hs.128866 | |nearest_unigene=Hs.128866 | ||
| Line 30: | Line 30: | ||
|start_of_center_position=17023127 | |start_of_center_position=17023127 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000475049.5 | + | |transcript_name=ENST00000475049.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10567.1 | |tss_id=hg_10567.1 | ||
Revision as of 18:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17023127 |
|---|---|
| End of the center position in the TSS region: | 17023128 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000475049.5 |
|---|---|
| Distance: | -24 |
| Num_trans: | 4 |
| All_trans: | ENST00000475049.5:-24 ENST00000485092.5:83 LF357200:221 MA592777:221 |
TATA-Box annotation
| Distance to TSS: | -11199 |
|---|---|
| Nearest PromoterID: | NM_022089 |
| Entrez ID: | 23400 |
| Nearest Unigene: | Hs.128866 |
| Nearest Refseq: | NM_022089 |
| Nearest Ensembl: | ENSG00000159363 |
| Gene Name: | succinate dehydrogenase complex iron sulfur subunit B |
| Gene Alias: | CLN12|HSA9947|KRPPD|PARK9|SPG78 |
| Gene Description: | ATPase cation transporting 13A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
