Difference between revisions of "TSS:Hg 105801.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Cyp-D= | |Cyp-D= | ||
|CypD= | |CypD= | ||
| + | |all_trans=LF333523:0 MA569100:0 LF333522:-84 MA569099:-84 LF333525:205 MA569102:205 LF333521:-308 MA569098:-308 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=6523 |
|end=79354022 | |end=79354022 | ||
|end_of_center_position=79353993 | |end_of_center_position=79353993 | ||
|entrez_id=10105 | |entrez_id=10105 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=CYP3 | + | |gene_alias=CYP3{{!}}CyP-M{{!}}Cyp-D{{!}}CypD |
|gene_description=peptidylprolyl isomerase F | |gene_description=peptidylprolyl isomerase F | ||
|gene_name=PPIF | |gene_name=PPIF | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_005729 | |nearest_refseq=NM_005729 | ||
|nearest_unigene=Hs.381072 | |nearest_unigene=Hs.381072 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=79353962 | |start=79353962 | ||
|start_of_center_position=79353992 | |start_of_center_position=79353992 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF333523 MA569100 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105801.1 | |tss_id=hg_105801.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 18:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 79353992 |
|---|---|
| End of the center position in the TSS region: | 79353993 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF333523 MA569100 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | LF333523:0 MA569100:0 LF333522:-84 MA569099:-84 LF333525:205 MA569102:205 LF333521:-308 MA569098:-308 |
TATA-Box annotation
| Distance to TSS: | 6523 |
|---|---|
| Nearest PromoterID: | NM_005729 |
| Entrez ID: | 10105 |
| Nearest Unigene: | Hs.381072 |
| Nearest Refseq: | NM_005729 |
| Nearest Ensembl: | ENSG00000108179 |
| Gene Name: | PPIF |
| Gene Alias: | CYP3|CyP-M|Cyp-D|CypD |
| Gene Description: | peptidylprolyl isomerase F |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
