Difference between revisions of "TSS:Hg 105811.1"
From referenceTSS
| Line 9: | Line 9: | ||
|SPA= | |SPA= | ||
|SPA1= | |SPA1= | ||
| − | |all_trans= | + | |all_trans=ENST00000428376.6:67 ENST00000398636.8:67 NM_005411:67 NM_001164645:67 NM_001164647:67 NM_001164646:67 NM_001164644:67 NM_001093770:67 AK290703:67 AK298002:67 AK298034:67 AK298029:67 LQ270737:67 LQ270739:67 LQ270741:67 LQ270743:67 LQ270745:67 LQ270747:67 AK316196:68 HQ021433:68 HQ021434:68 HQ021435:68 HQ021436:68 HQ021437:68 HQ021438:68 HQ021439:68 HQ021440:68 HQ021441:68 HQ021442:68 JX502764:68 JX502765:68 AK298092:70 S69687:72 S69688:72 S69690:72 AK309518:72 ENST00000419470.6:73 BC026229:73 M13686:79 ENST00000429958.5:81 BC111570:88 ENST00000486922.1:89 BC029913:447 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 18: | Line 18: | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=COLEC4 | + | |gene_alias=COLEC4{{!}}PSAP{{!}}PSP-A{{!}}PSPA{{!}}SFTP1{{!}}SFTPA1B{{!}}SP-A{{!}}SP-A1{{!}}SPA{{!}}SPA1 |
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
|gene_id=653509 | |gene_id=653509 | ||
| Line 28: | Line 28: | ||
|hgnc_mgi_id=HGNC:10798 | |hgnc_mgi_id=HGNC:10798 | ||
|nearest_ensembl=ENSG00000122852 | |nearest_ensembl=ENSG00000122852 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001164644 |
|nearest_refseq=NM_005411 | |nearest_refseq=NM_005411 | ||
|nearest_unigene=Hs.535295 | |nearest_unigene=Hs.535295 | ||
| − | |num_trans= | + | |num_trans=43 |
|species=human | |species=human | ||
|start=79610863 | |start=79610863 | ||
|start_of_center_position=79610867 | |start_of_center_position=79610867 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=40(ATCTATAAATGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000428376.6 ENST00000398636.8 NM_005411 NM_001164645 NM_001164647 NM_001164646 NM_001164644 NM_001093770 AK290703 AK298002 AK298034 AK298029 LQ270737 LQ270739 LQ270741 LQ270743 LQ270745 LQ270747 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105811.1 | |tss_id=hg_105811.1 | ||
Revision as of 18:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 79610867 |
|---|---|
| End of the center position in the TSS region: | 79610868 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000428376.6 ENST00000398636.8 NM_005411 NM_001164645 NM_001164647 NM_001164646 NM_001164644 NM_001093770 AK290703 AK298002 AK298034 AK298029 LQ270737 LQ270739 LQ270741 LQ270743 LQ270745 LQ270747 |
|---|---|
| Distance: | 67 |
| Num_trans: | 43 |
| All_trans: | ENST00000428376.6:67 ENST00000398636.8:67 NM_005411:67 NM_001164645:67 NM_001164647:67 NM_001164646:67 NM_001164644:67 NM_001093770:67 AK290703:67 AK298002:67 AK298034:67 AK298029:67 LQ270737:67 LQ270739:67 LQ270741:67 LQ270743:67 LQ270745:67 LQ270747:67 AK316196:68 HQ021433:68 HQ021434:68 HQ021435:68 HQ021436:68 HQ021437:68 HQ021438:68 HQ021439:68 HQ021440:68 HQ021441:68 HQ021442:68 JX502764:68 JX502765:68 AK298092:70 S69687:72 S69688:72 S69690:72 AK309518:72 ENST00000419470.6:73 BC026229:73 M13686:79 ENST00000429958.5:81 BC111570:88 ENST00000486922.1:89 BC029913:447 |
TATA-Box annotation
| Distance to TSS: | -71 |
|---|---|
| Nearest PromoterID: | NM_001164644 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | surfactant protein A1 |
| Gene Alias: | COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 40(ATCTATAAATGC,-,0.00) |
