Difference between revisions of "TSS:Hg 105970.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000443292.1:18 BC029291:18 ENST00000372071.6:-25 NM_001030015:-25 DQ426884:-33 ENST00000241891.10:-35 NM_033282:-35 BC113558:129 BC143688:129 KJ899974:184 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:14449 | |hgnc_mgi_id=HGNC:14449 | ||
|nearest_ensembl=ENSG00000122375 | |nearest_ensembl=ENSG00000122375 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001030015 |
|nearest_refseq=NM_033282 | |nearest_refseq=NM_033282 | ||
|nearest_unigene=Hs.283922 | |nearest_unigene=Hs.283922 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=86654581 | |start=86654581 | ||
|start_of_center_position=86654590 | |start_of_center_position=86654590 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-76(CGCTATATAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000443292.1 BC029291 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105970.1 | |tss_id=hg_105970.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=C9JWU6 | + | |uniprot_id=C9JWU6 |
}} | }} | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86654590 |
|---|---|
| End of the center position in the TSS region: | 86654591 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000443292.1 BC029291 |
|---|---|
| Distance: | 18 |
| Num_trans: | 10 |
| All_trans: | ENST00000443292.1:18 BC029291:18 ENST00000372071.6:-25 NM_001030015:-25 DQ426884:-33 ENST00000241891.10:-35 NM_033282:-35 BC113558:129 BC143688:129 KJ899974:184 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001030015 |
| Entrez ID: | 94233 |
| Nearest Unigene: | Hs.283922 |
| Nearest Refseq: | NM_033282 |
| Nearest Ensembl: | ENSG00000122375 |
| Gene Name: | opsin 4 |
| Gene Alias: | MOP |
| Gene Description: | opsin 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -76(CGCTATATAAAG,-,0.00) |
