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Difference between revisions of "TSS:Hg 106096.1"

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Line 6: Line 6:
 
|FASTM=
 
|FASTM=
 
|TNFRSF6=
 
|TNFRSF6=
−
|all_trans=ENST00000357339.6:0 ENST00000488877.5:0 ENST00000494410.5:0 ENST00000479522.5:0 uc001kft.4:0 uc057uto.1:0 uc057utp.1:0 uc001kfw.4:0 X83490:0 X83491:0 X83492:0 X83493:0 DQ894675:0 KJ890693:0 KR709616:0 KR709617:0 KR709618:0 KR709619:0 ENST00000492756.5:1 ENST00000355279.2:1 uc001kfs.4:1 uc057utq.1:1 X89101:1 CR450307:1 FJ200481:1 FJ373045:1 FJ373046:1 FM246457:1 FM246458:1 FM246459:1 Z47993:1 Z47994:1 Z47995:1 Z66556:1 Z70519:1 Z70520:1 ENST00000484444.5:-6 uc057utn.1:-6 ENST00000352159.8:-50 uc057utm.1:-50 ENST00000612663.4:-54 uc057utl.1:-54 M67454:-54 AY495076:-54 EU481974:-54 ENST00000355740.6:-80 uc001kfr.4:-80 X63717:-80 ENST00000460510.5:84 uc057utr.1:84 AK290978:-106 ENST00000477270.5:144 uc057uts.1:144 BC012479:-170 NM_000043:-178 NM_001320619:-178 NM_152871:-178 NM_152872:-178 NR_028033:-178 NR_028034:-178 NR_028035:-178 NR_028036:-178 NR_135313:-178 ENST00000626542.2:-206 ENST00000615406.4:-206 uc057utj.1:-206 uc057utk.1:-206 ENST00000313771.9:412 NR_135314:412 NR_135315:412 uc009xtp.4:412 AK311424:412
+
|all_trans=ENST00000357339.6:0 ENST00000652046.1:0 ENST00000488877.5:0 ENST00000494410.5:0 ENST00000479522.5:0 NR_028036:0 NM_000043:0 NR_028034:0 NR_028033:0 NM_001320619:0 NM_152872:0 NM_152871:0 NR_028035:0 NR_135313:0 X83490:0 X83491:0 X83492:0 X83493:0 DQ894675:0 KJ890693:0 KR709616:0 KR709617:0 KR709618:0 KR709619:0 ENST00000492756.5:1 ENST00000355279.2:1 X89101:1 CR450307:1 FJ200481:1 FJ373045:1 FJ373046:1 FM246457:1 FM246458:1 FM246459:1 Z47993:1 Z47994:1 Z47995:1 Z66556:1 Z70519:1 Z70520:1 ENST00000484444.5:-6 ENST00000352159.8:-50 AY495076:-54 EU481974:-54 M67454:-54 X63717:-80 ENST00000460510.5:84 AK290978:-106 ENST00000477270.5:144 ENST00000612663.5:-155 BC012479:-170 ENST00000355740.7:-206 KJ958564:-206 KM114217:-206 ENST00000313771.9:412 AK311424:412
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.05
 
|cpg_percent=0.05
 
|distance=0
 
|distance=0
−
|distance_to_tss=247
+
|distance_to_tss=8
 
|end=88990876
 
|end=88990876
 
|end_of_center_position=88990807
 
|end_of_center_position=88990807
 
|entrez_id=355
 
|entrez_id=355
 
|gc_percent=0.636816
 
|gc_percent=0.636816
−
|gene_alias=ALPS1A
+
|gene_alias=ALPS1A{{!}}APO-1{{!}}APT1{{!}}CD95{{!}}FAS1{{!}}FASTM{{!}}TNFRSF6
 
|gene_description=Fas cell surface death receptor
 
|gene_description=Fas cell surface death receptor
 
|gene_id=355
 
|gene_id=355
Line 25: Line 25:
 
|hgnc_mgi_id=HGNC:11920
 
|hgnc_mgi_id=HGNC:11920
 
|nearest_ensembl=ENSG00000026103
 
|nearest_ensembl=ENSG00000026103
−
|nearest_promoter_id=NR_028033
+
|nearest_promoter_id=NM_001320619
 
|nearest_refseq=NM_000043
 
|nearest_refseq=NM_000043
 
|nearest_unigene=Hs.244139
 
|nearest_unigene=Hs.244139
−
|num_trans=72
+
|num_trans=56
 
|species=human
 
|species=human
 
|start=88990736
 
|start=88990736
 
|start_of_center_position=88990806
 
|start_of_center_position=88990806
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000357339.6 ENST00000488877.5 ENST00000494410.5 ENST00000479522.5 uc001kft.4 uc057uto.1 uc057utp.1 uc001kfw.4 X83490 X83491 X83492 X83493 DQ894675 KJ890693 KR709616 KR709617 KR709618 KR709619
+
|transcript_name=ENST00000357339.6 ENST00000652046.1 ENST00000488877.5 ENST00000494410.5 ENST00000479522.5 NR_028036 NM_000043 NR_028034 NR_028033 NM_001320619 NM_152872 NM_152871 NR_028035 NR_135313 X83490 X83491 X83492 X83493 DQ894675 KJ890693 KR709616 KR709617 KR709618 KR709619
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_106096.1
 
|tss_id=hg_106096.1

Revision as of 18:29, 15 June 2021

Basic information about the TSS

TSS ID:hg_106096.1
Species:human
Chr:chr10
TSS Classification:yes
Start:88990736
End:88990876
Strand:+
TSS Score:1
Start of the center position in the TSS region:88990806
End of the center position in the TSS region:88990807



Gene and protein annotation

Transcript_name:ENST00000357339.6 ENST00000652046.1 ENST00000488877.5 ENST00000494410.5 ENST00000479522.5 NR_028036 NM_000043 NR_028034 NR_028033 NM_001320619 NM_152872 NM_152871 NR_028035 NR_135313 X83490 X83491 X83492 X83493 DQ894675 KJ890693 KR709616 KR709617 KR709618 KR709619
Distance:0
GeneID:355
HGNC/MGI_ID:HGNC:11920
UniProt_ID:P25445
Gene_name:Fas cell surface death receptor
Gene_symbol:FAS
Gene_synonyms:APO-1 CD95
Gene_source:HGNC:11920



Transcript annotation

Transcript_name:ENST00000357339.6 ENST00000652046.1 ENST00000488877.5 ENST00000494410.5 ENST00000479522.5 NR_028036 NM_000043 NR_028034 NR_028033 NM_001320619 NM_152872 NM_152871 NR_028035 NR_135313 X83490 X83491 X83492 X83493 DQ894675 KJ890693 KR709616 KR709617 KR709618 KR709619
Distance:0
Num_trans:56
All_trans:ENST00000357339.6:0 ENST00000652046.1:0 ENST00000488877.5:0 ENST00000494410.5:0 ENST00000479522.5:0 NR_028036:0 NM_000043:0 NR_028034:0 NR_028033:0 NM_001320619:0 NM_152872:0 NM_152871:0 NR_028035:0 NR_135313:0 X83490:0 X83491:0 X83492:0 X83493:0 DQ894675:0 KJ890693:0 KR709616:0 KR709617:0 KR709618:0 KR709619:0 ENST00000492756.5:1 ENST00000355279.2:1 X89101:1 CR450307:1 FJ200481:1 FJ373045:1 FJ373046:1 FM246457:1 FM246458:1 FM246459:1 Z47993:1 Z47994:1 Z47995:1 Z66556:1 Z70519:1 Z70520:1 ENST00000484444.5:-6 ENST00000352159.8:-50 AY495076:-54 EU481974:-54 M67454:-54 X63717:-80 ENST00000460510.5:84 AK290978:-106 ENST00000477270.5:144 ENST00000612663.5:-155 BC012479:-170 ENST00000355740.7:-206 KJ958564:-206 KM114217:-206 ENST00000313771.9:412 AK311424:412



TATA-Box annotation

Distance to TSS:8
Nearest PromoterID:NM_001320619
Entrez ID:355
Nearest Unigene:Hs.244139
Nearest Refseq:NM_000043
Nearest Ensembl:ENSG00000026103
Gene Name:Fas cell surface death receptor
Gene Alias:ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6
Gene Description:Fas cell surface death receptor
Gene Type:protein-coding
CpG%:0.05
GC%:0.636816
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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