Difference between revisions of "TSS:Hg 106142.1"
From referenceTSS
| Line 12: | Line 12: | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=-144 | |distance=-144 | ||
| − | |distance_to_tss= | + | |distance_to_tss=8222 |
|end=89340756 | |end=89340756 | ||
|end_of_center_position=89340751 | |end_of_center_position=89340751 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49{{!}}GARG-49{{!}}IFI60{{!}}IFIT4{{!}}IRG2{{!}}ISG60{{!}}P60{{!}}RIG-G{{!}}cig41 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:5411 | |hgnc_mgi_id=HGNC:5411 | ||
|nearest_ensembl=ENSG00000119917 | |nearest_ensembl=ENSG00000119917 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001289759 |
|nearest_refseq=NM_001549 | |nearest_refseq=NM_001549 | ||
|nearest_unigene=Hs.47338 | |nearest_unigene=Hs.47338 | ||
| Line 35: | Line 35: | ||
|start_of_center_position=89340750 | |start_of_center_position=89340750 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-4(GGTCATAAATGG,-,0.00) |
|transcript_name=AF026943 | |transcript_name=AF026943 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 18:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89340750 |
|---|---|
| End of the center position in the TSS region: | 89340751 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF026943 |
|---|---|
| Distance: | -144 |
| Num_trans: | 1 |
| All_trans: | AF026943:-144 |
TATA-Box annotation
| Distance to TSS: | 8222 |
|---|---|
| Nearest PromoterID: | NM_001289759 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -4(GGTCATAAATGG,-,0.00) |
