Difference between revisions of "TSS:Hg 10615.1"
From referenceTSS
| Line 2: | Line 2: | ||
|P5CD= | |P5CD= | ||
|P5CDh= | |P5CDh= | ||
| − | |all_trans=ENST00000290597.9 | + | |all_trans=ENST00000375341.8:18 NM_003748:18 NM_170726:18 ENST00000290597.9:20 U24266:20 U24267:20 AK222486:20 BC023600:33 BC007581:44 ENST00000538839.5:45 FJ462711:45 GQ891378:50 KJ897887:50 KR710110:50 DQ893505:50 DQ896489:50 AB587364:50 ENST00000432718.1:-134 AK289972:-134 NM_001319218:-209 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=18 |
| − | |distance_to_tss= | + | |distance_to_tss=-26 |
|end=18902590 | |end=18902590 | ||
|end_of_center_position=18902582 | |end_of_center_position=18902582 | ||
|entrez_id=8659 | |entrez_id=8659 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=ALDH4 | + | |gene_alias=ALDH4{{!}}P5CD{{!}}P5CDh |
|gene_description=aldehyde dehydrogenase 4 family member A1 | |gene_description=aldehyde dehydrogenase 4 family member A1 | ||
|gene_id=8659 | |gene_id=8659 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:406 | |hgnc_mgi_id=HGNC:406 | ||
|nearest_ensembl=ENSG00000159423 | |nearest_ensembl=ENSG00000159423 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003748 |
|nearest_refseq=NM_003748 | |nearest_refseq=NM_003748 | ||
|nearest_unigene=Hs.77448 | |nearest_unigene=Hs.77448 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=18902572 | |start=18902572 | ||
|start_of_center_position=18902581 | |start_of_center_position=18902581 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000375341.8 NM_003748 NM_170726 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10615.1 | |tss_id=hg_10615.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024RAC7 P30038 |
}} | }} | ||
Revision as of 18:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18902581 |
|---|---|
| End of the center position in the TSS region: | 18902582 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375341.8 NM_003748 NM_170726 |
|---|---|
| Distance: | 18 |
| Num_trans: | 20 |
| All_trans: | ENST00000375341.8:18 NM_003748:18 NM_170726:18 ENST00000290597.9:20 U24266:20 U24267:20 AK222486:20 BC023600:33 BC007581:44 ENST00000538839.5:45 FJ462711:45 GQ891378:50 KJ897887:50 KR710110:50 DQ893505:50 DQ896489:50 AB587364:50 ENST00000432718.1:-134 AK289972:-134 NM_001319218:-209 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_003748 |
| Entrez ID: | 8659 |
| Nearest Unigene: | Hs.77448 |
| Nearest Refseq: | NM_003748 |
| Nearest Ensembl: | ENSG00000159423 |
| Gene Name: | aldehyde dehydrogenase 4 family member A1 |
| Gene Alias: | ALDH4|P5CD|P5CDh |
| Gene Description: | aldehyde dehydrogenase 4 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
