Difference between revisions of "TSS:Hg 106209.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_046310:11 NM_032373: | + | |all_trans=NR_046310:11 ENST00000336126.6:72 NM_032373:72 MP014882:94 ENST00000490164.1:192 AL832496:197 ENST00000496708.1:-410 ENST00000543648.5:-436 NM_001256549:-436 AK303014:-436 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28264 | |hgnc_mgi_id=HGNC:28264 | ||
|nearest_ensembl=ENSG00000180628 | |nearest_ensembl=ENSG00000180628 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_046310 |
|nearest_refseq=NM_032373 | |nearest_refseq=NM_032373 | ||
|nearest_unigene=Hs.500512 | |nearest_unigene=Hs.500512 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=91220586 | |start=91220586 | ||
|start_of_center_position=91220588 | |start_of_center_position=91220588 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NR_046310 | + | |transcript_name=NR_046310 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106209.1 | |tss_id=hg_106209.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:32, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 91220588 |
|---|---|
| End of the center position in the TSS region: | 91220589 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_046310 |
|---|---|
| Distance: | 11 |
| Num_trans: | 10 |
| All_trans: | NR_046310:11 ENST00000336126.6:72 NM_032373:72 MP014882:94 ENST00000490164.1:192 AL832496:197 ENST00000496708.1:-410 ENST00000543648.5:-436 NM_001256549:-436 AK303014:-436 |
TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NR_046310 |
| Entrez ID: | 84333 |
| Nearest Unigene: | Hs.500512 |
| Nearest Refseq: | NM_032373 |
| Nearest Ensembl: | ENSG00000180628 |
| Gene Name: | polycomb group ring finger 5 |
| Gene Alias: | RNF159 |
| Gene Description: | polycomb group ring finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
