Difference between revisions of "TSS:Hg 106464.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SPG33= | |SPG33= | ||
| − | |all_trans=ENST00000337540.11:0 ENST00000370613.7:0 ENST00000370610.7:0 ENST00000357540.8:0 ENST00000393677.8:0 ENST00000423811.3:0 ENST00000359980.5:0 ENST00000462887.1 | + | |all_trans=ENST00000337540.11:0 ENST00000370613.7:0 ENST00000370610.7:0 ENST00000357540.8:0 ENST00000393677.8:0 ENST00000423811.3:0 ENST00000359980.5:0 ENST00000462887.1:0 NM_001174122:0 NM_001174121:0 NM_001174120:0 NM_001174119:0 NM_001002262:0 NM_144588:0 AK296295:0 AK057481:0 AK300438:0 AK299735:0 AK097945:0 BC030621:0 AK074876:0 AK296588:0 BX647836:0 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=97737197 | |end=97737197 | ||
|end_of_center_position=97737157 | |end_of_center_position=97737157 | ||
|entrez_id=118813 | |entrez_id=118813 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=PROTRUDIN | + | |gene_alias=PROTRUDIN{{!}}SPG33 |
|gene_description=zinc finger FYVE-type containing 27 | |gene_description=zinc finger FYVE-type containing 27 | ||
|gene_id=118813 | |gene_id=118813 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26559 | |hgnc_mgi_id=HGNC:26559 | ||
|nearest_ensembl=ENSG00000155256 | |nearest_ensembl=ENSG00000155256 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_144588 |
|nearest_refseq=NM_144588 | |nearest_refseq=NM_144588 | ||
|nearest_unigene=Hs.744075 | |nearest_unigene=Hs.744075 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=97737115 | |start=97737115 | ||
|start_of_center_position=97737156 | |start_of_center_position=97737156 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000337540.11 ENST00000370613.7 ENST00000370610.7 ENST00000357540.8 ENST00000393677.8 ENST00000423811.3 ENST00000359980.5 ENST00000462887.1 | + | |transcript_name=ENST00000337540.11 ENST00000370613.7 ENST00000370610.7 ENST00000357540.8 ENST00000393677.8 ENST00000423811.3 ENST00000359980.5 ENST00000462887.1 NM_001174122 NM_001174121 NM_001174120 NM_001174119 NM_001002262 NM_144588 AK296295 AK057481 AK300438 AK299735 AK097945 BC030621 AK074876 AK296588 BX647836 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106464.1 | |tss_id=hg_106464.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7Z6J9 Q5T4F4 | + | |uniprot_id=B7Z6J9 Q5T4F4 |
}} | }} | ||
Revision as of 18:38, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97737156 |
|---|---|
| End of the center position in the TSS region: | 97737157 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000337540.11 ENST00000370613.7 ENST00000370610.7 ENST00000357540.8 ENST00000393677.8 ENST00000423811.3 ENST00000359980.5 ENST00000462887.1 NM_001174122 NM_001174121 NM_001174120 NM_001174119 NM_001002262 NM_144588 AK296295 AK057481 AK300438 AK299735 AK097945 BC030621 AK074876 AK296588 BX647836 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000337540.11:0 ENST00000370613.7:0 ENST00000370610.7:0 ENST00000357540.8:0 ENST00000393677.8:0 ENST00000423811.3:0 ENST00000359980.5:0 ENST00000462887.1:0 NM_001174122:0 NM_001174121:0 NM_001174120:0 NM_001174119:0 NM_001002262:0 NM_144588:0 AK296295:0 AK057481:0 AK300438:0 AK299735:0 AK097945:0 BC030621:0 AK074876:0 AK296588:0 BX647836:0 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_144588 |
| Entrez ID: | 118813 |
| Nearest Unigene: | Hs.744075 |
| Nearest Refseq: | NM_144588 |
| Nearest Ensembl: | ENSG00000155256 |
| Gene Name: | zinc finger FYVE-type containing 27 |
| Gene Alias: | PROTRUDIN|SPG33 |
| Gene Description: | zinc finger FYVE-type containing 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
