Difference between revisions of "TSS:Hg 106702.1"
From referenceTSS
| Line 4: | Line 4: | ||
|LYT10= | |LYT10= | ||
|NF-kB2= | |NF-kB2= | ||
| − | |all_trans= | + | |all_trans=ENST00000652277.1:6 ENST00000189444.11:18 ENST00000661543.1:18 NM_001261403:18 NM_002502:18 NM_001322934:18 ENST00000467116.5:19 X61499:19 X61498:19 ENST00000471698.6:20 AK292654:56 LF213820:-67 MA449397:-67 AB384801:272 U09609:273 KT935449:273 BT009769:273 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=6 | |distance=6 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-31 |
|end=102395687 | |end=102395687 | ||
|end_of_center_position=102395675 | |end_of_center_position=102395675 | ||
|entrez_id=4791 | |entrez_id=4791 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=CVID10 | + | |gene_alias=CVID10{{!}}H2TF1{{!}}LYT-10{{!}}LYT10{{!}}NF-kB2{{!}}p100{{!}}p49/p100{{!}}p52 |
|gene_description=nuclear factor kappa B subunit 2 | |gene_description=nuclear factor kappa B subunit 2 | ||
|gene_id=4791 | |gene_id=4791 | ||
| − | |gene_name=nuclear factor | + | |gene_name=nuclear factor kappa B subunit 2 |
|gene_source=HGNC:7795 | |gene_source=HGNC:7795 | ||
|gene_symbol=NFKB2 | |gene_symbol=NFKB2 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_002502 | |nearest_refseq=NM_002502 | ||
|nearest_unigene=Hs.73090 | |nearest_unigene=Hs.73090 | ||
| − | |num_trans= | + | |num_trans=17 |
|p100= | |p100= | ||
|p49/p100= | |p49/p100= | ||
| Line 34: | Line 34: | ||
|start_of_center_position=102395674 | |start_of_center_position=102395674 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000652277.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106702.1 | |tss_id=hg_106702.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q00653 |
}} | }} | ||
Revision as of 18:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102395674 |
|---|---|
| End of the center position in the TSS region: | 102395675 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000652277.1 |
|---|---|
| Distance: | 6 |
| Num_trans: | 17 |
| All_trans: | ENST00000652277.1:6 ENST00000189444.11:18 ENST00000661543.1:18 NM_001261403:18 NM_002502:18 NM_001322934:18 ENST00000467116.5:19 X61499:19 X61498:19 ENST00000471698.6:20 AK292654:56 LF213820:-67 MA449397:-67 AB384801:272 U09609:273 KT935449:273 BT009769:273 |
TATA-Box annotation
| Distance to TSS: | -31 |
|---|---|
| Nearest PromoterID: | NM_001261403 |
| Entrez ID: | 4791 |
| Nearest Unigene: | Hs.73090 |
| Nearest Refseq: | NM_002502 |
| Nearest Ensembl: | ENSG00000077150 |
| Gene Name: | nuclear factor kappa B subunit 2 |
| Gene Alias: | CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 |
| Gene Description: | nuclear factor kappa B subunit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
