Difference between revisions of "TSS:Hg 111976.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000488181. | + | |all_trans=ENST00000488181.2:13 AK309217:38 AK297577:-47 NR_146939:-230 NM_001350921:-230 NM_001350922:-230 NM_001350923:-230 |
|bA422P15.2= | |bA422P15.2= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=13 | |distance=13 | ||
| − | |distance_to_tss= | + | |distance_to_tss=49 |
|end=126670463 | |end=126670463 | ||
|end_of_center_position=126670461 | |end_of_center_position=126670461 | ||
|entrez_id=118611 | |entrez_id=118611 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=FATS | + | |gene_alias=FATS{{!}}bA422P15.2 |
|gene_description=chromosome 10 open reading frame 90 | |gene_description=chromosome 10 open reading frame 90 | ||
|gene_id=118611 | |gene_id=118611 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26563 | |hgnc_mgi_id=HGNC:26563 | ||
|nearest_ensembl=ENSG00000154493 | |nearest_ensembl=ENSG00000154493 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350921 |
|nearest_refseq=NM_001004298 | |nearest_refseq=NM_001004298 | ||
|nearest_unigene=Hs.587663 | |nearest_unigene=Hs.587663 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=126670458 | |start=126670458 | ||
|start_of_center_position=126670460 | |start_of_center_position=126670460 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000488181. | + | |transcript_name=ENST00000488181.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_111976.1 | |tss_id=hg_111976.1 | ||
Revision as of 20:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 126670460 |
|---|---|
| End of the center position in the TSS region: | 126670461 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000488181.2 |
|---|---|
| Distance: | 13 |
| Num_trans: | 7 |
| All_trans: | ENST00000488181.2:13 AK309217:38 AK297577:-47 NR_146939:-230 NM_001350921:-230 NM_001350922:-230 NM_001350923:-230 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_001350921 |
| Entrez ID: | 118611 |
| Nearest Unigene: | Hs.587663 |
| Nearest Refseq: | NM_001004298 |
| Nearest Ensembl: | ENSG00000154493 |
| Gene Name: | chromosome 10 open reading frame 90 |
| Gene Alias: | FATS|bA422P15.2 |
| Gene Description: | chromosome 10 open reading frame 90 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
