Difference between revisions of "TSS:Hg 117686.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000529070 | + | |all_trans=ENST00000529070.1:-16 AK308670:-16 ENST00000655895.1:32 ENST00000533091.1:111 ENST00000527712.1:120 ENST00000662392.1:-281 ENST00000662879.1:-387 NR_027276:-396 AK125302:-396 ENST00000533922.6:-407 ENST00000532706.2:-452 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2731 |
|gene_id=100128239 | |gene_id=100128239 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2731 |
| − | |gene_source= | + | |gene_source=HGNC:54248 |
| − | |gene_symbol= | + | |gene_symbol=LINC02731 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:54248 |
|nearest_ensembl=ENSG00000204241 | |nearest_ensembl=ENSG00000204241 | ||
|nearest_promoter_id=NR_027276 | |nearest_promoter_id=NR_027276 | ||
|nearest_refseq=NR_027276 | |nearest_refseq=NR_027276 | ||
|nearest_unigene=Hs.423734 | |nearest_unigene=Hs.423734 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=134032667 | |start=134032667 | ||
|start_of_center_position=134032676 | |start_of_center_position=134032676 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000529070 | + | |transcript_name=ENST00000529070.1 AK308670 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_117686.1 | |tss_id=hg_117686.1 | ||
Revision as of 22:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 134032676 |
|---|---|
| End of the center position in the TSS region: | 134032677 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000529070.1 AK308670 |
|---|---|
| Distance: | -16 |
| Num_trans: | 11 |
| All_trans: | ENST00000529070.1:-16 AK308670:-16 ENST00000655895.1:32 ENST00000533091.1:111 ENST00000527712.1:120 ENST00000662392.1:-281 ENST00000662879.1:-387 NR_027276:-396 AK125302:-396 ENST00000533922.6:-407 ENST00000532706.2:-452 |
TATA-Box annotation
| Distance to TSS: | 404 |
|---|---|
| Nearest PromoterID: | NR_027276 |
| Entrez ID: | 100128239 |
| Nearest Unigene: | Hs.423734 |
| Nearest Refseq: | NR_027276 |
| Nearest Ensembl: | ENSG00000204241 |
| Gene Name: | long intergenic non-protein coding RNA 2731 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2731 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
