Difference between revisions of "TSS:Hg 117818.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000529362 | + | |all_trans=ENST00000529362.1:-56 KJ904221:-341 ENST00000397472.6:-348 BC110868:-348 ENST00000524550.5:-352 BC143419:-358 ENST00000529966.5:-360 ENST00000534603.5:-360 BC112145:-360 BC143415:-360 BC143416:-360 BC143418:-360 BC143421:-360 BC143423:-360 BC143420:-360 BC143422:-360 ENST00000532839.5:-361 ENST00000528602.1:-361 AK091602:-361 ENST00000532320.5:-362 AK309153:-362 ENST00000319863.13:-364 ENST00000526325.5:-364 NM_001318822:-364 NM_001318823:-364 NM_182612:-364 NR_134867:-364 NM_001318818:-364 NM_001318821:-364 NM_001318820:-364 NR_134868:-364 NM_001318824:-364 AK092816:-364 AK293559:-364 ENST00000354286.8:-365 AK128653:-378 LF207968:-423 MA443545:-423 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=-56 | |distance=-56 | ||
| − | |distance_to_tss= | + | |distance_to_tss=368 |
|end=777123 | |end=777123 | ||
|end_of_center_position=777119 | |end_of_center_position=777119 | ||
|entrez_id=347862 | |entrez_id=347862 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias= | + | |gene_alias=PDDC1 |
| − | |gene_description= | + | |gene_description=glutamine amidotransferase like class 1 domain containing 1 |
|gene_id=347862 | |gene_id=347862 | ||
| − | |gene_name= | + | |gene_name=glutamine amidotransferase like class 1 domain containing 1 |
|gene_source=HGNC:26616 | |gene_source=HGNC:26616 | ||
| − | |gene_symbol= | + | |gene_symbol=GATD1 |
|gene_synonyms=FLJ34283 | |gene_synonyms=FLJ34283 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26616 | |hgnc_mgi_id=HGNC:26616 | ||
|nearest_ensembl=ENSG00000177225 | |nearest_ensembl=ENSG00000177225 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_182612 |
|nearest_refseq=NM_182612 | |nearest_refseq=NM_182612 | ||
|nearest_unigene=Hs.218362 | |nearest_unigene=Hs.218362 | ||
| − | |num_trans= | + | |num_trans=38 |
|species=human | |species=human | ||
|start=777114 | |start=777114 | ||
|start_of_center_position=777118 | |start_of_center_position=777118 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000529362 | + | |transcript_name=ENST00000529362.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_117818.1 | |tss_id=hg_117818.1 | ||
Revision as of 23:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 777118 |
|---|---|
| End of the center position in the TSS region: | 777119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000529362.1 |
|---|---|
| Distance: | -56 |
| Num_trans: | 38 |
| All_trans: | ENST00000529362.1:-56 KJ904221:-341 ENST00000397472.6:-348 BC110868:-348 ENST00000524550.5:-352 BC143419:-358 ENST00000529966.5:-360 ENST00000534603.5:-360 BC112145:-360 BC143415:-360 BC143416:-360 BC143418:-360 BC143421:-360 BC143423:-360 BC143420:-360 BC143422:-360 ENST00000532839.5:-361 ENST00000528602.1:-361 AK091602:-361 ENST00000532320.5:-362 AK309153:-362 ENST00000319863.13:-364 ENST00000526325.5:-364 NM_001318822:-364 NM_001318823:-364 NM_182612:-364 NR_134867:-364 NM_001318818:-364 NM_001318821:-364 NM_001318820:-364 NR_134868:-364 NM_001318824:-364 AK092816:-364 AK293559:-364 ENST00000354286.8:-365 AK128653:-378 LF207968:-423 MA443545:-423 |
TATA-Box annotation
| Distance to TSS: | 368 |
|---|---|
| Nearest PromoterID: | NM_182612 |
| Entrez ID: | 347862 |
| Nearest Unigene: | Hs.218362 |
| Nearest Refseq: | NM_182612 |
| Nearest Ensembl: | ENSG00000177225 |
| Gene Name: | glutamine amidotransferase like class 1 domain containing 1 |
| Gene Alias: | PDDC1 |
| Gene Description: | glutamine amidotransferase like class 1 domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
