Difference between revisions of "TSS:Hg 12228.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TCL5= | |TCL5= | ||
| − | |all_trans=ENST00000464796.5:0 | + | |all_trans=ENST00000464796.5:0 NM_001290406:0 S53678:0 S53686:0 NM_001290403:-97 NM_003189:-97 NM_001290405:321 NM_001290404:321 S53691:411 ENST00000371884.6:495 NM_001287347:495 S53245:495 |
|bHLHa17= | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=47232238 | |end=47232238 | ||
|end_of_center_position=47232224 | |end_of_center_position=47232224 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL{{!}}TCL5{{!}}bHLHa17{{!}}tal-1 |
| − | |gene_description= | + | |gene_description=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_id=6886 | |gene_id=6886 | ||
| − | |gene_name= | + | |gene_name=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_source=HGNC:11556 | |gene_source=HGNC:11556 | ||
|gene_symbol=TAL1 | |gene_symbol=TAL1 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_003189 | |nearest_refseq=NM_003189 | ||
|nearest_unigene=Hs.705618 | |nearest_unigene=Hs.705618 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=47232209 | |start=47232209 | ||
| Line 30: | Line 30: | ||
|strand=- | |strand=- | ||
|tal-1= | |tal-1= | ||
| − | |tata_box= | + | |tata_box=72(CTTTTTCTAGGG,+,0.00) |
| − | |transcript_name=ENST00000464796.5 | + | |transcript_name=ENST00000464796.5 NM_001290406 S53678 S53686 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_12228.1 | |tss_id=hg_12228.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P17542 |
}} | }} | ||
Revision as of 00:45, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47232223 |
|---|---|
| End of the center position in the TSS region: | 47232224 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000464796.5 NM_001290406 S53678 S53686 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000464796.5:0 NM_001290406:0 S53678:0 S53686:0 NM_001290403:-97 NM_003189:-97 NM_001290405:321 NM_001290404:321 S53691:411 ENST00000371884.6:495 NM_001287347:495 S53245:495 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001290406 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Alias: | SCL|TCL5|bHLHa17|tal-1 |
| Gene Description: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 72(CTTTTTCTAGGG,+,0.00) |
