Difference between revisions of "TSS:Hg 123314.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000318291.4 | + | |all_trans=ENST00000318291.4:-19 BC033133:-19 AK311371:23 ENST00000655409.1:60 ENST00000670735.1:203 ENST00000543884.2:-326 ENST00000662519.1:397 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=-19 | |distance=-19 | ||
| − | |distance_to_tss= | + | |distance_to_tss=630 |
|end=643013 | |end=643013 | ||
|end_of_center_position=643007 | |end_of_center_position=643007 | ||
| Line 12: | Line 12: | ||
|gene_description=ninjurin 2 | |gene_description=ninjurin 2 | ||
|gene_id=100049716 | |gene_id=100049716 | ||
| − | |gene_name= | + | |gene_name=NINJ2 antisense RNA 1 |
| − | |gene_source= | + | |gene_source=HGNC:40405 |
| − | |gene_symbol= | + | |gene_symbol=NINJ2-AS1 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:40405 |
|nearest_ensembl=ENSG00000171840 | |nearest_ensembl=ENSG00000171840 | ||
|nearest_promoter_id=NM_001294346 | |nearest_promoter_id=NM_001294346 | ||
|nearest_refseq=NM_016533 | |nearest_refseq=NM_016533 | ||
|nearest_unigene=Hs.655804 | |nearest_unigene=Hs.655804 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=642999 | |start=642999 | ||
|start_of_center_position=643006 | |start_of_center_position=643006 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000318291.4 | + | |transcript_name=ENST00000318291.4 BC033133 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_123314.1 | |tss_id=hg_123314.1 | ||
Revision as of 01:08, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 643006 |
|---|---|
| End of the center position in the TSS region: | 643007 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000318291.4 BC033133 |
|---|---|
| Distance: | -19 |
| Num_trans: | 7 |
| All_trans: | ENST00000318291.4:-19 BC033133:-19 AK311371:23 ENST00000655409.1:60 ENST00000670735.1:203 ENST00000543884.2:-326 ENST00000662519.1:397 |
TATA-Box annotation
| Distance to TSS: | 630 |
|---|---|
| Nearest PromoterID: | NM_001294346 |
| Entrez ID: | 4815 |
| Nearest Unigene: | Hs.655804 |
| Nearest Refseq: | NM_016533 |
| Nearest Ensembl: | ENSG00000171840 |
| Gene Name: | NINJ2 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | ninjurin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
