Difference between revisions of "TSS:Hg 131282.1"
From referenceTSS
| Line 3: | Line 3: | ||
|HOXC11-AS1= | |HOXC11-AS1= | ||
|NCRNA00072= | |NCRNA00072= | ||
| − | |all_trans=ENST00000453875.5 | + | |all_trans=ENST00000453875.5:0 AK123741:8 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 12: | Line 12: | ||
|entrez_id=100124700 | |entrez_id=100124700 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=HOXAS | + | |gene_alias=HOXAS{{!}}HOXC-AS4{{!}}HOXC11-AS1{{!}}NCRNA00072 |
|gene_description=HOX transcript antisense RNA | |gene_description=HOX transcript antisense RNA | ||
|gene_id=100124700 | |gene_id=100124700 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NR_003716 | |nearest_refseq=NR_003716 | ||
|nearest_unigene=Hs.197076 | |nearest_unigene=Hs.197076 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=53967354 | |start=53967354 | ||
|start_of_center_position=53967367 | |start_of_center_position=53967367 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000453875.5 | + | |transcript_name=ENST00000453875.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_131282.1 | |tss_id=hg_131282.1 | ||
Revision as of 04:14, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 53967367 |
|---|---|
| End of the center position in the TSS region: | 53967368 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000453875.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000453875.5:0 AK123741:8 |
TATA-Box annotation
| Distance to TSS: | 1389 |
|---|---|
| Nearest PromoterID: | NR_003716 |
| Entrez ID: | 100124700 |
| Nearest Unigene: | Hs.197076 |
| Nearest Refseq: | NR_003716 |
| Nearest Ensembl: | ENSG00000228630 |
| Gene Name: | HOX transcript antisense RNA |
| Gene Alias: | HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 |
| Gene Description: | HOX transcript antisense RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
